Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D8767_RS23115 Genome accession   NZ_CP033104
Coordinates   4888988..4890055 (-) Length   355 a.a.
NCBI ID   WP_016715435.1    Uniprot ID   -
Organism   Pseudomonas sp. LTGT-11-2Z     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4883988..4895055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8767_RS23080 (D8767_23080) - 4884323..4884688 (-) 366 WP_010952700.1 diacylglycerol kinase -
  D8767_RS23085 (D8767_23085) erdR 4884762..4885412 (-) 651 WP_016715442.1 response regulator transcription factor ErdR -
  D8767_RS23090 (D8767_23090) - 4885592..4886302 (-) 711 WP_016715441.1 tRNA-uridine aminocarboxypropyltransferase -
  D8767_RS23095 (D8767_23095) - 4886520..4886939 (+) 420 WP_016715439.1 quorum-sensing-regulated virulence factor family protein -
  D8767_RS23100 (D8767_23100) - 4886955..4887164 (-) 210 WP_016715438.1 hypothetical protein -
  D8767_RS23105 (D8767_23105) - 4887325..4888446 (+) 1122 WP_016715437.1 LOG family protein -
  D8767_RS23110 (D8767_23110) recX 4888496..4888966 (-) 471 WP_016715436.1 recombination regulator RecX -
  D8767_RS23115 (D8767_23115) recA 4888988..4890055 (-) 1068 WP_016715435.1 recombinase RecA Machinery gene
  D8767_RS23120 (D8767_23120) - 4890159..4890641 (-) 483 WP_016715434.1 CinA family protein -
  D8767_RS28870 - 4890688..4890837 (-) 150 WP_154670320.1 hypothetical protein -
  D8767_RS23125 (D8767_23125) - 4890839..4891492 (-) 654 WP_016715432.1 hypothetical protein -
  D8767_RS23130 (D8767_23130) mutS 4891744..4894329 (+) 2586 WP_080693993.1 DNA mismatch repair protein MutS -
  D8767_RS23135 (D8767_23135) fdxA 4894470..4894793 (+) 324 WP_016712908.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37531.89 Da        Isoelectric Point: 5.3078

>NTDB_id=321385 D8767_RS23115 WP_016715435.1 4888988..4890055(-) (recA) [Pseudomonas sp. LTGT-11-2Z]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIRDKLLTSGAVAAAGKAAAVEADADDMADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=321385 D8767_RS23115 WP_016715435.1 4888988..4890055(-) (recA) [Pseudomonas sp. LTGT-11-2Z]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCAGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATCCCGGCCATTTCCACCGGTTCGCTGGGCCTGGACATCGCACTGGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTCGACCCTGAATACGCGGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTTGACTCCGTGGCCGCCCTGGTGCCGAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGTATGAAGATCGGCGTAATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAATTCTACGCCTCGGTGCGCCTGGACATCCGTCGTACGGGTGCGGTCAAGGAAGGCGACGAGGTGGTTGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCACCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCGCAACGGCGAAATCATCGACCTGGGTGTTTCCCAAGGTCTGGTCGAGAAGTCCGGTGCCTGGTATGCCTACCAAG
GCAACAAGATTGGTCAAGGTAAAGCCAACGCCGCCAAGTACCTGGCTGAGAACCCGGCGATTGGTGCCGAGATCGAGAAG
CAGATTCGCGACAAGTTGCTGACTTCTGGCGCTGTCGCTGCTGCTGGCAAAGCTGCGGCTGTCGAAGCAGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.057

99.155

0.893
  recA Acinetobacter baylyi ADP1

76.133

93.239

0.71
  recA Acinetobacter baumannii D1279779

74.85

94.085

0.704
  recA Vibrio cholerae strain A1552

73.78

92.394

0.682
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.78

92.394

0.682
  recA Glaesserella parasuis strain SC1401

67.614

99.155

0.67
  recA Ralstonia pseudosolanacearum GMI1000

70.746

94.366

0.668
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.095

94.648

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

94.085

0.575
  recA Helicobacter pylori 26695

62.385

92.113

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.423

0.561
  recA Streptococcus mitis SK321

55.65

99.718

0.555
  recA Streptococcus pyogenes NZ131

55.182

100

0.555
  recA Streptococcus mitis NCTC 12261

55.908

97.746

0.546
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Streptococcus mutans UA159

58.769

91.549

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513

Multiple sequence alignment