Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D9V35_RS07515 Genome accession   NZ_CP033087
Coordinates   1659299..1660327 (-) Length   342 a.a.
NCBI ID   WP_110438496.1    Uniprot ID   -
Organism   Commensalibacter melissae strain AMU001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1654299..1665327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V35_RS07480 (D9V35_07480) - 1654491..1655018 (-) 528 WP_122123976.1 DUF2155 domain-containing protein -
  D9V35_RS07485 (D9V35_07485) - 1655015..1655236 (-) 222 WP_122123977.1 hypothetical protein -
  D9V35_RS07490 (D9V35_07490) mlaD 1655266..1655790 (-) 525 WP_240993358.1 outer membrane lipid asymmetry maintenance protein MlaD -
  D9V35_RS07495 (D9V35_07495) - 1655815..1656183 (-) 369 WP_122123979.1 NADH-ubiquinone oxidoreductase subunit NDUFA12 family protein -
  D9V35_RS07500 (D9V35_07500) - 1656489..1658048 (+) 1560 WP_122123980.1 vitamin B12-dependent ribonucleotide reductase -
  D9V35_RS07505 (D9V35_07505) - 1658063..1658524 (+) 462 WP_110438494.1 RidA family protein -
  D9V35_RS07510 (D9V35_07510) - 1658926..1659168 (-) 243 WP_162988613.1 hypothetical protein -
  D9V35_RS07515 (D9V35_07515) recA 1659299..1660327 (-) 1029 WP_110438496.1 recombinase RecA Machinery gene
  D9V35_RS07520 (D9V35_07520) - 1660504..1662027 (-) 1524 WP_240993359.1 gamma-glutamyltransferase -
  D9V35_RS07525 (D9V35_07525) - 1662207..1662971 (+) 765 WP_122123982.1 DsbA family protein -
  D9V35_RS07530 (D9V35_07530) hemA 1663016..1664242 (-) 1227 WP_240993360.1 5-aminolevulinate synthase -
  D9V35_RS07535 (D9V35_07535) - 1664363..1664818 (-) 456 WP_122123983.1 hypothetical protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37009.43 Da        Isoelectric Point: 5.7285

>NTDB_id=321246 D9V35_RS07515 WP_110438496.1 1659299..1660327(-) (recA) [Commensalibacter melissae strain AMU001]
MDKNKALEGALSQIERAFGKGSIMKMGEQSVVQVEAISTGSIGLDIALGIGGVPRGRIVEIYGPESSGKTTMALHIIAEA
QKKGGTCAFLDAEHALDPIYARKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDNH
VGLHARLMSQALRKLTGSVSRSNTCLIFLNQIRQKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGQVKEKDEITGNQTR
IKVVKNKMAPPFKQVEFDIMYGEGISKMGELIDLGVKAGIIEKAGSWFSYDSQRIGQGRENVKQFLREHPEISQVIEQRI
REHSGIIGEGSMDDMAIGTDDL

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=321246 D9V35_RS07515 WP_110438496.1 1659299..1660327(-) (recA) [Commensalibacter melissae strain AMU001]
ATGGACAAGAATAAAGCATTAGAAGGAGCTTTGTCTCAGATTGAACGTGCCTTTGGTAAAGGTTCAATCATGAAGATGGG
AGAGCAGTCTGTCGTTCAAGTGGAAGCAATTTCAACAGGCTCGATTGGTCTGGATATTGCTTTAGGAATTGGTGGTGTCC
CTCGTGGACGTATAGTTGAAATCTATGGTCCAGAAAGTTCCGGGAAAACAACAATGGCGTTGCATATTATAGCCGAGGCT
CAAAAAAAGGGTGGTACATGTGCATTTTTGGATGCCGAACACGCTCTTGATCCCATTTATGCGCGTAAGCTCGGCGTTGA
TATTGATAATTTGCTCATCTCTCAACCTGATGCCGGGGAACAGGCATTGGAAATTGCGGATACTTTGGTTCGTTCTGGCG
CTATTGATGTCTTGGTAGTGGACAGTGTGGCGGCATTGGTTCCCCGTGCAGAGTTGGAAGGGGATATGGGTGACAATCAT
GTTGGATTACATGCCCGTTTGATGAGCCAGGCCTTAAGAAAATTGACCGGATCTGTTTCTCGTTCCAATACCTGTCTGAT
TTTCCTCAATCAAATTCGTCAAAAGATTGGTGTTATGTTTGGATCGCCAGAAACAACTACAGGCGGAAATGCATTGAAGT
TCTATTCTTCTGTACGTATGGATATTCGTCGTATCGGTCAGGTGAAGGAAAAGGACGAAATCACAGGAAACCAGACGCGG
ATTAAGGTGGTTAAAAATAAAATGGCTCCTCCTTTCAAGCAGGTTGAATTCGACATTATGTATGGAGAAGGAATTAGTAA
GATGGGAGAATTGATAGATCTGGGTGTAAAAGCAGGGATTATTGAAAAAGCGGGTTCATGGTTTTCTTATGACAGTCAGC
GTATTGGTCAGGGCCGGGAAAATGTAAAGCAGTTCTTGCGAGAGCATCCGGAGATAAGTCAGGTTATTGAGCAACGTATT
CGTGAGCATTCTGGTATTATTGGTGAAGGCTCGATGGATGATATGGCTATCGGGACTGATGATTTGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.656

98.538

0.667
  recA Neisseria gonorrhoeae MS11

67.656

98.538

0.667
  recA Neisseria gonorrhoeae strain FA1090

67.656

98.538

0.667
  recA Acinetobacter baylyi ADP1

70.497

94.152

0.664
  recA Acinetobacter baumannii D1279779

69.565

94.152

0.655
  recA Pseudomonas stutzeri DSM 10701

67.802

94.444

0.64
  recA Glaesserella parasuis strain SC1401

68.025

93.275

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

65.653

96.199

0.632
  recA Ralstonia pseudosolanacearum GMI1000

67.085

93.275

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.393

98.246

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

93.86

0.614
  recA Vibrio cholerae strain A1552

65.421

93.86

0.614
  recA Helicobacter pylori strain NCTC11637

64

95.029

0.608
  recA Helicobacter pylori 26695

63.692

95.029

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

95.029

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.614

0.596
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

93.567

0.588
  recA Streptococcus pneumoniae D39

60.909

96.491

0.588
  recA Streptococcus pneumoniae R6

60.909

96.491

0.588
  recA Streptococcus pneumoniae Rx1

60.909

96.491

0.588
  recA Streptococcus pneumoniae TIGR4

60.909

96.491

0.588
  recA Streptococcus mitis NCTC 12261

60.606

96.491

0.585
  recA Streptococcus mutans UA159

59.347

98.538

0.585
  recA Streptococcus mitis SK321

60.303

96.491

0.582
  recA Streptococcus pyogenes NZ131

60.185

94.737

0.57
  recA Lactococcus lactis subsp. cremoris KW2

57.402

96.784

0.556

Multiple sequence alignment