Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PCC8801_RS04635 Genome accession   NC_011726
Coordinates   997300..998349 (-) Length   349 a.a.
NCBI ID   WP_012594297.1    Uniprot ID   -
Organism   Rippkaea orientalis PCC 8801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992300..1003349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC8801_RS04605 (PCC8801_0939) - 992766..993881 (+) 1116 WP_012594291.1 hypothetical protein -
  PCC8801_RS04610 (PCC8801_0940) - 993978..994217 (+) 240 WP_012594292.1 hypothetical protein -
  PCC8801_RS04615 (PCC8801_0941) - 994341..994853 (-) 513 WP_012594293.1 hypothetical protein -
  PCC8801_RS04620 (PCC8801_0942) - 995346..996026 (+) 681 WP_012594294.1 ATP-dependent Clp protease proteolytic subunit -
  PCC8801_RS04625 (PCC8801_0943) - 996071..996670 (+) 600 WP_012594295.1 ATP-dependent Clp protease proteolytic subunit -
  PCC8801_RS04630 (PCC8801_0944) - 996795..997244 (+) 450 WP_012594296.1 DUF29 domain-containing protein -
  PCC8801_RS04635 (PCC8801_0945) recA 997300..998349 (-) 1050 WP_012594297.1 recombinase RecA Machinery gene
  PCC8801_RS04640 (PCC8801_0946) - 998497..1001070 (-) 2574 WP_012594298.1 M1 family metallopeptidase -
  PCC8801_RS04645 (PCC8801_0947) - 1001278..1001955 (+) 678 WP_012594299.1 class I SAM-dependent methyltransferase -
  PCC8801_RS04650 (PCC8801_0948) - 1002052..1002810 (-) 759 WP_012594300.1 helix-hairpin-helix domain-containing protein -
  PCC8801_RS04655 (PCC8801_0949) - 1002873..1003079 (-) 207 WP_012594301.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37530.72 Da        Isoelectric Point: 4.9424

>NTDB_id=32110 PCC8801_RS04635 WP_012594297.1 997300..998349(-) (recA) [Rippkaea orientalis PCC 8801]
MAAITNNPDKEKALGLVLNQIERNFGKGSIMRLGDAARMRVETISSGSLTLDLALGGGLPQGRIIEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPNYSNALGVDIDNLLVAQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
EMGDTQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGSEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENISQGRDNAVKYLEDNPEVA
DTIERQVREKLELGSLNFAISQTDDNEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=32110 PCC8801_RS04635 WP_012594297.1 997300..998349(-) (recA) [Rippkaea orientalis PCC 8801]
ATGGCTGCTATTACGAACAATCCTGACAAAGAAAAGGCATTAGGCTTAGTTCTTAATCAAATTGAGCGAAATTTCGGAAA
AGGCTCAATTATGCGCCTGGGGGACGCGGCGCGGATGCGGGTAGAAACCATTTCTAGTGGTTCCTTAACCCTAGATTTAG
CCTTGGGAGGAGGACTCCCCCAAGGACGTATTATCGAGATTTACGGGCCAGAAAGTTCCGGTAAAACCACCCTCGCCCTT
CATGCGATCGCAGAAGTGCAAAAAGCCGGGGGTGTGGCGGCGTTTGTCGATGCAGAGCACGCCCTCGATCCTAACTATTC
TAATGCGTTAGGAGTCGATATTGACAATTTATTGGTTGCTCAACCCGATACGGGAGAATCTGCCCTAGAAATCGTCGATC
AGTTGGTGCGATCGGCCGCCGTTGATATCGTCGTCATCGACTCTGTAGCTGCCTTAGTCCCTCGCGCGGAAATTGAAGGG
GAAATGGGGGATACTCAAGTTGGGTTACAAGCGCGTTTGATGAGTAAAGCCCTGCGGAAAATCGCAGGAAATATCGGAAA
ATCGGGCTGTGTGGTTATTTTTCTCAACCAATTGCGACAAAAAATCGGCGTAACCTATGGTAGTCCTGAAGTGACAACGG
GGGGAAATGCCCTGAAATTTTATGCTTCCGTTCGCTTAGATATTCGCCGTATTCAAACCCTTAAAAAAGGCAGTGAGGGA
GAGTATGGTATTCGCGCTAAAGTCAAAGTCGCTAAGAATAAAGTAGCCCCTCCGTTTCGCATTGCGGAGTTTGATATTAT
TTTTGGCAAAGGCATTTCTCGGATGGGTTGTATGTTAGATTTAGCCGAACAAACCGATGTGGTCAATCGCAAAGGGGCTT
GGTATAGTTACAACGGAGAAAATATTTCCCAAGGGCGAGATAATGCGGTTAAATACCTCGAAGATAACCCAGAAGTTGCT
GACACAATCGAGAGACAAGTTCGGGAAAAATTAGAGTTAGGTTCTTTGAATTTTGCCATTTCTCAAACCGACGATAACGA
AGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.188

98.854

0.625
  recA Acinetobacter baumannii D1279779

62.974

98.281

0.619
  recA Pseudomonas stutzeri DSM 10701

64.242

94.556

0.607
  recA Ralstonia pseudosolanacearum GMI1000

62.727

94.556

0.593
  recA Neisseria gonorrhoeae MS11

62.422

92.264

0.576
  recA Neisseria gonorrhoeae MS11

62.422

92.264

0.576
  recA Neisseria gonorrhoeae strain FA1090

62.422

92.264

0.576
  recA Vibrio cholerae strain A1552

61.42

92.837

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.42

92.837

0.57
  recA Glaesserella parasuis strain SC1401

61.61

92.55

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

61.043

93.41

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

91.977

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.391

98.854

0.567
  recA Helicobacter pylori 26695

60.55

93.696

0.567
  recA Helicobacter pylori strain NCTC11637

60.55

93.696

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

95.129

0.562
  recA Streptococcus pneumoniae R6

59.271

94.269

0.559
  recA Streptococcus pneumoniae Rx1

59.271

94.269

0.559
  recA Streptococcus pneumoniae D39

59.271

94.269

0.559
  recA Streptococcus pneumoniae TIGR4

59.271

94.269

0.559
  recA Streptococcus mitis SK321

59.877

92.837

0.556
  recA Streptococcus mitis NCTC 12261

59.877

92.837

0.556
  recA Streptococcus pyogenes NZ131

58.716

93.696

0.55
  recA Streptococcus mutans UA159

55.362

98.854

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.642

92.837

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.916

95.129

0.513

Multiple sequence alignment