Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HYN43_RS19655 Genome accession   NZ_CP032869
Coordinates   4799374..4800399 (-) Length   341 a.a.
NCBI ID   WP_119410955.1    Uniprot ID   -
Organism   Mucilaginibacter celer strain HYN0043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4794374..4805399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN43_RS19635 (HYN43_019635) - 4794724..4796493 (-) 1770 WP_119410952.1 glycosyltransferase family 39 protein -
  HYN43_RS30790 - 4796600..4796782 (+) 183 WP_245446943.1 DinB family protein -
  HYN43_RS30795 - 4796770..4797066 (+) 297 WP_245446945.1 DinB family protein -
  HYN43_RS19645 (HYN43_019645) cfa 4797118..4798239 (-) 1122 WP_119410953.1 cyclopropane fatty acyl phospholipid synthase -
  HYN43_RS19650 (HYN43_019650) - 4798562..4799110 (-) 549 WP_119410954.1 transposase -
  HYN43_RS19655 (HYN43_019655) recA 4799374..4800399 (-) 1026 WP_119410955.1 recombinase RecA Machinery gene
  HYN43_RS19660 (HYN43_019660) nth 4800564..4801319 (-) 756 WP_119410956.1 endonuclease III -
  HYN43_RS19665 (HYN43_019665) - 4801660..4801854 (-) 195 WP_119410957.1 hypothetical protein -
  HYN43_RS19670 (HYN43_019670) - 4802159..4802743 (-) 585 WP_022829898.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37047.47 Da        Isoelectric Point: 5.1947

>NTDB_id=319849 HYN43_RS19655 WP_119410955.1 4799374..4800399(-) (recA) [Mucilaginibacter celer strain HYN0043]
MATTDNKNNSDKLKALQLTLDKLEKSYGKGTIMKLGESVVEQTEVISTGSLGLDIALGVNGLPKGRIIEIYGPESSGKTT
LAIHAIAESQKKGGIAAFIDAEHAFDRFYAKKLGVDVENLLISQPDNGEQALEIADNLIRSGAIDILVIDSVAALVPKAE
IEGEMGDSKMGLHARLMSQALRKLTGTISKTGCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDVRRISQIKDT
DEVSGNRVKVKIVKNKVAPPFRVAEFDIMFGEGISKAGEIIDLGVEYNIIKKAGSWFSYGETRLGQGRDAVKQLILDNPE
LQEELENRIRETVTGESMEEV

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=319849 HYN43_RS19655 WP_119410955.1 4799374..4800399(-) (recA) [Mucilaginibacter celer strain HYN0043]
ATGGCTACTACAGATAATAAAAATAACTCGGATAAATTAAAAGCATTACAGCTTACACTGGATAAGCTGGAAAAATCATA
CGGAAAAGGCACCATCATGAAGCTGGGCGAATCTGTAGTTGAGCAAACTGAGGTGATCTCGACCGGTTCATTAGGTTTGG
ATATAGCTTTGGGCGTTAATGGTTTGCCTAAAGGAAGGATCATTGAGATCTATGGCCCGGAATCATCTGGTAAAACAACC
CTGGCTATCCATGCTATTGCCGAATCGCAGAAAAAAGGTGGTATTGCCGCTTTTATTGACGCGGAACATGCTTTTGATCG
TTTTTATGCCAAGAAATTAGGTGTAGATGTTGAGAACCTGTTGATCTCTCAGCCGGATAACGGTGAACAGGCTTTGGAAA
TTGCCGACAACCTGATCCGTTCGGGCGCTATCGATATCCTGGTTATCGACTCGGTTGCTGCCTTGGTTCCTAAAGCCGAG
ATTGAAGGTGAAATGGGCGATTCGAAAATGGGTTTGCATGCCCGTTTAATGTCGCAGGCCTTGCGTAAGCTAACCGGTAC
TATTAGCAAAACCGGATGCTGCTGTATTTTCATCAACCAGTTGCGTGATAAAATTGGTGTGATGTTCGGTAACCCCGAAA
CTACTACCGGTGGTAACGCCTTGAAATTCTACGCTTCGGTACGTTTGGATGTACGCCGCATCTCTCAAATTAAAGATACC
GACGAGGTTTCTGGTAACCGTGTTAAAGTTAAAATAGTTAAAAACAAAGTAGCTCCGCCATTCCGCGTAGCCGAATTTGA
TATCATGTTTGGCGAAGGTATTTCAAAAGCCGGCGAAATCATCGATCTGGGTGTTGAATACAACATCATTAAAAAAGCAG
GCTCATGGTTTAGCTACGGCGAAACCCGCTTAGGCCAGGGCCGTGACGCGGTTAAACAACTGATTCTTGATAACCCGGAA
TTACAGGAGGAACTGGAAAACAGGATCCGCGAGACTGTAACCGGTGAGAGCATGGAAGAGGTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.189

99.12

0.716
  recA Ralstonia pseudosolanacearum GMI1000

69.256

90.616

0.628
  recA Neisseria gonorrhoeae strain FA1090

65.635

94.721

0.622
  recA Neisseria gonorrhoeae MS11

65.635

94.721

0.622
  recA Neisseria gonorrhoeae MS11

65.635

94.721

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

94.428

0.616
  recA Acinetobacter baylyi ADP1

64

95.308

0.61
  recA Acinetobacter baumannii D1279779

64

95.308

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

97.067

0.604
  recA Helicobacter pylori strain NCTC11637

62.577

95.601

0.598
  recA Helicobacter pylori 26695

62.577

95.601

0.598
  recA Glaesserella parasuis strain SC1401

63.043

94.428

0.595
  recA Streptococcus pneumoniae R6

58.065

100

0.581
  recA Streptococcus pneumoniae TIGR4

58.065

100

0.581
  recA Streptococcus pneumoniae Rx1

58.065

100

0.581
  recA Streptococcus pneumoniae D39

58.065

100

0.581
  recA Streptococcus mitis SK321

60.366

96.188

0.581
  recA Streptococcus mitis NCTC 12261

60.366

96.188

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

93.842

0.578
  recA Pseudomonas stutzeri DSM 10701

60.87

94.428

0.575
  recA Streptococcus pyogenes NZ131

59.756

96.188

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.692

95.308

0.569
  recA Vibrio cholerae strain A1552

59.692

95.308

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.146

96.188

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.663

96.481

0.566
  recA Streptococcus mutans UA159

57.927

96.188

0.557

Multiple sequence alignment