Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FDV78_RS17050 Genome accession   NZ_CP040101
Coordinates   3552672..3554753 (+) Length   693 a.a.
NCBI ID   WP_179001261.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3547672..3559753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS17025 - 3548307..3548480 (-) 174 WP_020839946.1 hypothetical protein -
  FDV78_RS17030 (FDV78_18170) gmk 3548575..3549198 (+) 624 WP_005496750.1 guanylate kinase -
  FDV78_RS17035 (FDV78_18175) rpoZ 3549380..3549652 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  FDV78_RS17040 (FDV78_18180) spoT 3549692..3551812 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FDV78_RS17045 (FDV78_18185) trmH 3551870..3552553 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FDV78_RS17050 (FDV78_18190) recG 3552672..3554753 (+) 2082 WP_179001261.1 ATP-dependent DNA helicase RecG Machinery gene
  FDV78_RS17055 (FDV78_18200) - 3554986..3556377 (+) 1392 WP_042772208.1 uracil-xanthine permease family protein -
  FDV78_RS17060 (FDV78_18205) envZ 3556442..3557734 (-) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  FDV78_RS17065 (FDV78_18210) ompR 3557840..3558559 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  FDV78_RS17070 (FDV78_18215) - 3558777..3559169 (-) 393 WP_021449007.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76708.73 Da        Isoelectric Point: 7.9784

>NTDB_id=319842 FDV78_RS17050 WP_179001261.1 3552672..3554753(+) (recG) [Vibrio parahaemolyticus strain LVP2]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVSLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALALLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFDAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPSNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=319842 FDV78_RS17050 WP_179001261.1 3552672..3554753(+) (recG) [Vibrio parahaemolyticus strain LVP2]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCAGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCCGCGGTACAAGGTAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACTTTACGTAACCTTACTGAGCAAGCATTGGCGCTACTCGATAAAGCGGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAACCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAACCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCTCGCGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCGCATCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGGAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGATGCCATGGGCATTCA
AGTGGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCGGAAGTGTTGGAAGCTCAAGCCGCAGCAGACAC
CGCCGAAGAGTTGCAGCGCAAACTGCCAGATGTAAAAATTGGCCTAGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCTCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACGCCCCCCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTCGAGATCCGCGGGCCCGGCGAATTGTTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGGGATCAACGCTTAATTCCCGAAGTTCAACGTATTGCACGTCA
TATTCACGACAATTACCCAAGCAATGCAGCCGCCATCATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.149

96.681

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.149

96.681

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.362

94.949

0.374

Multiple sequence alignment