Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D8M16_RS04940 Genome accession   NZ_CP032841
Coordinates   1011941..1012999 (+) Length   352 a.a.
NCBI ID   WP_121478655.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain C15117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006941..1017999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8M16_RS04915 mltB 1007430..1008530 (+) 1101 WP_015571672.1 lytic murein transglycosylase B -
  D8M16_RS04920 - 1008820..1009473 (+) 654 WP_121478652.1 ATP-binding cassette domain-containing protein -
  D8M16_RS04925 - 1009470..1010330 (+) 861 WP_121478653.1 metal ABC transporter permease -
  D8M16_RS04930 - 1010345..1011223 (+) 879 WP_121478654.1 metal ABC transporter substrate-binding protein -
  D8M16_RS04935 pncC 1011354..1011851 (+) 498 WP_003862172.1 nicotinamide-nucleotide amidase -
  D8M16_RS04940 recA 1011941..1012999 (+) 1059 WP_121478655.1 recombinase RecA Machinery gene
  D8M16_RS04945 recX 1013068..1013568 (+) 501 WP_121478656.1 recombination regulator RecX -
  D8M16_RS04950 alaS 1013700..1016327 (+) 2628 WP_022651724.1 alanine--tRNA ligase -
  D8M16_RS04955 csrA 1016569..1016754 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37790.21 Da        Isoelectric Point: 4.8095

>NTDB_id=319087 D8M16_RS04940 WP_121478655.1 1011941..1012999(+) (recA) [Enterobacter hormaechei strain C15117]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=319087 D8M16_RS04940 WP_121478655.1 1011941..1012999(+) (recA) [Enterobacter hormaechei strain C15117]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTGTCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCGTCGGGTAAAACTACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACACCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTAGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

94.034

0.79
  recA Vibrio cholerae strain A1552

83.988

94.034

0.79
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

75.229

92.898

0.699
  recA Acinetobacter baylyi ADP1

74.695

93.182

0.696
  recA Glaesserella parasuis strain SC1401

69.253

98.864

0.685
  recA Neisseria gonorrhoeae MS11

69.018

92.614

0.639
  recA Neisseria gonorrhoeae MS11

69.018

92.614

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.614

0.639
  recA Ralstonia pseudosolanacearum GMI1000

71.383

88.352

0.631
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

60.534

95.739

0.58
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.761

0.577
  recA Helicobacter pylori 26695

60.237

95.739

0.577
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

91.193

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.802

92.045

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.735

94.318

0.554

Multiple sequence alignment