Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACRYD_RS00510 Genome accession   NZ_CP032825
Coordinates   113499..114548 (-) Length   349 a.a.
NCBI ID   WP_066153717.1    Uniprot ID   A0A1V9VB04
Organism   Aliarcobacter cryaerophilus D2610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108499..119548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRYD_RS00490 (ACRYD_0097) - 108502..109593 (-) 1092 WP_120985554.1 AAA family ATPase -
  ACRYD_RS00495 (ACRYD_0098) topA 109773..112106 (+) 2334 WP_120985556.1 type I DNA topoisomerase -
  ACRYD_RS00500 (ACRYD_0099) - 112107..112619 (+) 513 WP_120985558.1 metallophosphoesterase family protein -
  ACRYD_RS00505 (ACRYD_0100) - 112609..113457 (+) 849 WP_120985560.1 biotin synthase -
  ACRYD_RS00510 (ACRYD_0101) recA 113499..114548 (-) 1050 WP_066153717.1 recombinase RecA Machinery gene
  ACRYD_RS00515 (ACRYD_0102) - 114642..114830 (-) 189 WP_120985562.1 hypothetical protein -
  ACRYD_RS00520 (ACRYD_0103) pseB 114937..115596 (+) 660 Protein_93 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACRYD_RS00525 (ACRYD_0104) - 115732..116076 (-) 345 WP_120985563.1 hypothetical protein -
  ACRYD_RS00530 (ACRYD_0105) - 116078..117991 (-) 1914 WP_120985565.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37406.87 Da        Isoelectric Point: 4.7942

>NTDB_id=319012 ACRYD_RS00510 WP_066153717.1 113499..114548(-) (recA) [Aliarcobacter cryaerophilus D2610]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDIDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIIDKAGAWFSYGDTKIGQGRENSKVFLRDNPAIAKEIE
DKILNSMGINDAIIAGSIDSEDEASSLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=319012 ACRYD_RS00510 WP_066153717.1 113499..114548(-) (recA) [Aliarcobacter cryaerophilus D2610]
ATGGATGAAAATCAAAAAAAATCACTTGAACTTGCTATTAAACAAATAGATAAAGCTTTTGGAAAAGGTACGCTTATTAG
ATTAGGAGATAAAGAGGTAATTCCAACTGAAGCTATTAGTACAGGCTCACTTGGTCTTGATTTAGCTCTTGGAGTTGGTG
GTTTACCAAAAGGTAGAGTTATTGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACTTTAACACTTCACGCAATTGCT
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCATTTATAGATGCAGAACACGCACTTGATGTAAAATATGCAAAAGATATTGG
TGTAGATATTGACAATTTACTAGTTTCTCAACCAGATTTTGGTGAGCAAGCTTTAGAGATACTTGAAACTGTTATTAGAA
GTGGTGCTGTTGATTTAGTTGTTGTGGATTCTGTTGCTGCCTTAACACCTAAAGTGGAAATTGATGGTGATATGGATGAT
CAACAAGTTGGAGTTCAAGCTAGACTTATGAGTAAAGCTTTAAGAAAAATAACTGGACTTTTAAGCAAAATGAACTGTAC
AGTTATATTTATCAACCAAATAAGAATGAAAATTGGAATGACAGGATATGGAAGCCCAGAGACAACAACAGGTGGAAATG
CTTTAAAATTCTACTCATCAGTAAGACTAGATATTAGAAGAATTGCAACTTTAAAACAGGGTGAGAACTCAATTGGAAAT
AGAGTAAAAGTAAAAGTTGTTAAAAATAAAGTTGCTGCTCCATTTAAACAAGCTGAGTTTGATATTATGTTTGGTGAAGG
AATTTCAAAAACTGGTGAGCTTGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATTGGACAAGGAAGAGAGAACTCTAAAGTCTTCTTAAGAGATAATCCAGCTATTGCAAAAGAGATTGAA
GATAAAATTTTAAACTCTATGGGAATAAATGATGCAATAATTGCAGGAAGCATAGATAGTGAAGATGAAGCATCTTCTTT
AGATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9VB04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.802

98.281

0.745
  recA Helicobacter pylori strain NCTC11637

76.048

95.702

0.728
  recA Helicobacter pylori 26695

75.749

95.702

0.725
  recA Acinetobacter baumannii D1279779

63.714

100

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

94.269

0.613
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.099

98.281

0.61
  recA Acinetobacter baylyi ADP1

66.562

91.691

0.61
  recA Glaesserella parasuis strain SC1401

60.465

98.567

0.596
  recA Pseudomonas stutzeri DSM 10701

59.538

99.14

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.424

94.556

0.59
  recA Vibrio cholerae strain A1552

62.424

94.556

0.59
  recA Streptococcus mitis NCTC 12261

57.88

100

0.579
  recA Streptococcus pyogenes NZ131

56.303

100

0.576
  recA Ralstonia pseudosolanacearum GMI1000

63.81

90.258

0.576
  recA Streptococcus mitis SK321

57.02

100

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

57.31

97.994

0.562
  recA Streptococcus pneumoniae Rx1

57.31

97.994

0.562
  recA Streptococcus pneumoniae D39

57.31

97.994

0.562
  recA Streptococcus pneumoniae R6

57.31

97.994

0.562
  recA Streptococcus pneumoniae TIGR4

57.31

97.994

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

59.451

93.983

0.559
  recA Streptococcus mutans UA159

58.61

94.842

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.269

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

93.41

0.539

Multiple sequence alignment