Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D7D81_RS13155 Genome accession   NZ_CP032760
Coordinates   2744507..2745502 (-) Length   331 a.a.
NCBI ID   WP_286170403.1    Uniprot ID   -
Organism   Halocella sp. SP3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739507..2750502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D81_RS20315 - 2740752..2740835 (-) 84 WP_353622127.1 hypothetical protein -
  D7D81_RS13135 (D7D81_13185) - 2741135..2741395 (-) 261 WP_125990548.1 stage V sporulation protein S -
  D7D81_RS13140 (D7D81_13190) - 2741500..2742276 (-) 777 WP_125990549.1 TIGR00282 family metallophosphoesterase -
  D7D81_RS13145 (D7D81_13195) rny 2742348..2743892 (-) 1545 WP_125990550.1 ribonuclease Y -
  D7D81_RS13150 (D7D81_13200) - 2744035..2744523 (-) 489 WP_205739217.1 regulatory protein RecX -
  D7D81_RS13155 (D7D81_13205) recA 2744507..2745502 (-) 996 WP_286170403.1 recombinase RecA Machinery gene
  D7D81_RS13160 (D7D81_13210) thpR 2745640..2746203 (-) 564 WP_125990553.1 RNA 2',3'-cyclic phosphodiesterase -
  D7D81_RS13165 (D7D81_13215) - 2746205..2747365 (-) 1161 WP_164522256.1 tetratricopeptide repeat protein -
  D7D81_RS13170 (D7D81_13220) - 2747435..2748679 (-) 1245 WP_125990555.1 competence/damage-inducible protein A -
  D7D81_RS13175 (D7D81_13225) - 2748860..2750347 (-) 1488 WP_125990556.1 AAA family ATPase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 35574.73 Da        Isoelectric Point: 4.8761

>NTDB_id=318580 D7D81_RS13155 WP_286170403.1 2744507..2745502(-) (recA) [Halocella sp. SP3-1]
MAIKRIEKQFGQGSIMRLGEAKAMNVEVIPTGALPLDIALGVGGVPRGRIIEIYGPESSGKTTLALHIIAEAQKKGGIAA
FIDAEHALDPKYSENLGVNIDNLLISQPNNGEEALEIAEALVRSNAIDVIVIDSVAALVPKAEIDGEMGDSHVGLQARLM
SQAMRKLSGAISKSKTICIFINQIREKVGVMFGNPETTPGGRALKFYSSVRMEIRRAQAIKDGDESIGAQTKVKVVKNKV
APPFRQAMFDIMYGTGISASGCILDMGVETGIIDRAGSWYSYGDERLGQGRENSKKFLEDNGDILKEVDEKIRGSLGLLD
EEEVAASEEES

Nucleotide


Download         Length: 996 bp        

>NTDB_id=318580 D7D81_RS13155 WP_286170403.1 2744507..2745502(-) (recA) [Halocella sp. SP3-1]
ATGGCGATTAAAAGAATTGAAAAACAGTTTGGTCAAGGTTCAATTATGAGATTGGGAGAGGCTAAAGCAATGAATGTAGA
GGTTATACCTACAGGGGCTCTTCCGCTTGATATAGCCCTTGGTGTAGGAGGGGTTCCTAGGGGTAGGATTATTGAGATAT
ATGGGCCAGAATCCTCTGGGAAAACGACACTAGCCTTACATATTATAGCTGAAGCCCAGAAAAAGGGTGGGATAGCTGCT
TTTATAGATGCAGAACATGCCCTTGATCCAAAGTATTCGGAAAACCTGGGGGTTAATATTGATAATCTCTTGATATCACA
GCCAAATAATGGGGAAGAGGCCCTGGAAATTGCTGAAGCCTTAGTGAGGAGTAATGCTATAGATGTTATTGTAATTGATT
CGGTAGCTGCTCTGGTTCCAAAGGCAGAAATAGATGGAGAGATGGGAGACAGTCATGTTGGTTTACAGGCAAGATTAATG
TCACAGGCCATGCGTAAGCTTTCGGGGGCAATAAGTAAATCCAAGACTATTTGTATTTTTATCAATCAAATCAGGGAAAA
GGTTGGGGTTATGTTTGGGAACCCGGAGACAACTCCAGGTGGAAGGGCTTTAAAGTTTTATTCTTCTGTAAGAATGGAGA
TAAGGCGGGCTCAGGCAATTAAAGATGGTGATGAGTCTATTGGTGCTCAAACTAAAGTAAAGGTTGTCAAAAACAAGGTA
GCCCCACCATTTAGACAGGCTATGTTTGATATTATGTATGGGACCGGCATTTCTGCTTCTGGTTGTATACTTGATATGGG
GGTTGAGACCGGTATTATTGATCGGGCCGGTTCCTGGTATTCTTATGGTGATGAACGACTTGGTCAGGGACGGGAAAACT
CCAAGAAATTTCTGGAGGATAATGGAGATATCTTAAAAGAGGTAGATGAAAAAATCAGGGGTTCATTAGGTTTATTAGAT
GAAGAAGAGGTTGCTGCCAGTGAGGAAGAATCTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.384

96.073

0.686
  recA Latilactobacillus sakei subsp. sakei 23K

66.163

100

0.662
  recA Streptococcus mitis NCTC 12261

64.565

100

0.65
  recA Streptococcus pneumoniae D39

64.072

100

0.647
  recA Streptococcus pneumoniae Rx1

64.072

100

0.647
  recA Streptococcus pneumoniae R6

64.072

100

0.647
  recA Streptococcus pneumoniae TIGR4

64.072

100

0.647
  recA Streptococcus mitis SK321

64.264

100

0.647
  recA Streptococcus mutans UA159

63.393

100

0.644
  recA Lactococcus lactis subsp. cremoris KW2

63.72

99.094

0.631
  recA Ralstonia pseudosolanacearum GMI1000

63.272

97.885

0.619
  recA Streptococcus pyogenes NZ131

63.75

96.677

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.606

99.698

0.604
  recA Acinetobacter baylyi ADP1

60.671

99.094

0.601
  recA Acinetobacter baumannii D1279779

60.121

100

0.601
  recA Glaesserella parasuis strain SC1401

62.54

95.166

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.141

94.26

0.595
  recA Vibrio cholerae strain A1552

63.141

94.26

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.25

96.677

0.592
  recA Pseudomonas stutzeri DSM 10701

62.222

95.166

0.592
  recA Helicobacter pylori strain NCTC11637

61.321

96.073

0.589
  recA Neisseria gonorrhoeae MS11

62.581

93.656

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.581

93.656

0.586
  recA Neisseria gonorrhoeae MS11

62.581

93.656

0.586
  recA Helicobacter pylori 26695

61.006

96.073

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.911

95.468

0.553

Multiple sequence alignment