Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D6Z43_RS26150 Genome accession   NZ_CP032616
Coordinates   5556010..5557056 (+) Length   348 a.a.
NCBI ID   WP_120654888.1    Uniprot ID   -
Organism   Pseudomonas sp. DY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5551010..5562056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS26135 (D6Z43_26135) fdxA 5552302..5552625 (-) 324 WP_120654885.1 ferredoxin FdxA -
  D6Z43_RS26140 (D6Z43_26140) mutS 5552766..5555339 (-) 2574 WP_174235595.1 DNA mismatch repair protein MutS -
  D6Z43_RS26145 (D6Z43_26145) - 5555410..5555922 (+) 513 WP_120654887.1 CinA family protein -
  D6Z43_RS26150 (D6Z43_26150) recA 5556010..5557056 (+) 1047 WP_120654888.1 recombinase RecA Machinery gene
  D6Z43_RS26155 (D6Z43_26155) recX 5557064..5557525 (+) 462 WP_120654889.1 recombination regulator RecX -
  D6Z43_RS26160 (D6Z43_26160) - 5557604..5558683 (-) 1080 WP_120654890.1 LOG family protein -
  D6Z43_RS26165 (D6Z43_26165) - 5558911..5559324 (-) 414 WP_120654891.1 quorum-sensing-regulated virulence factor family protein -
  D6Z43_RS26170 (D6Z43_26170) - 5559535..5560245 (+) 711 WP_120654892.1 tRNA-uridine aminocarboxypropyltransferase -
  D6Z43_RS26175 (D6Z43_26175) - 5560246..5561226 (-) 981 WP_371924293.1 DMT family transporter -
  D6Z43_RS26180 (D6Z43_26180) erdR 5561354..5562004 (+) 651 WP_120654894.1 response regulator transcription factor ErdR -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37146.55 Da        Isoelectric Point: 5.3078

>NTDB_id=317064 D6Z43_RS26150 WP_120654888.1 5556010..5557056(+) (recA) [Pseudomonas sp. DY-1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSE
TRVKVVKNKVAPPFRQAEFQIMYGKGIYRTGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGKANAAKYLEDNPEVASAIEK
IIREKLLVDSSANTKSAATVDDLADVDL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=317064 D6Z43_RS26150 WP_120654888.1 5556010..5557056(+) (recA) [Pseudomonas sp. DY-1]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCTGCCCTGGGCCAGATCGAGAAACAGTTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCATGACCGCCAGGCTATCCCGGCTATTTCTACCGGTTCCCTGGGCCTGGACATCGCGCTTGGTATTGGCG
GCCTGCCGAAGGGGCGTATCGTAGAAATCTACGGTCCCGAATCTTCCGGTAAGACCACCCTGACCCTCTCCGTCATCGCC
GAAGCCCAGAAAATGGGCGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTGGATCCGGACTACGCCGGCAAGCTCGG
CGTGAATGTCGACGATCTGCTGGTTTCCCAACCGGATACTGGCGAACAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTACCCAAGGCCGAAATCGAAGGCGAAATGGGTGAC
TCCCACGTTGGTCTGCAAGCGCGCCTGATGTCCCAGGCACTGCGCAAGATTACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGCAACCCGGAAACCACCACTGGCGGTAACGCCC
TGAAGTTCTACGCCTCCGTGCGCCTCGACATTCGCCGCACCGGCGCGGTGAAAGAGGGTGAGGAAGTCGTGGGCAGTGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTCCGCCCTTCCGCCAGGCCGAATTCCAGATCATGTACGGCAAAGGCAT
CTACCGCACCGGCGAGATCATCGACCTGGGTGTGCAGCAGGGCCTGGTGGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAAGGCAAGGCGAATGCCGCCAAGTACCTGGAAGACAACCCGGAAGTTGCTAGCGCCATCGAGAAG
ATCATCCGCGAGAAGCTGCTGGTCGACTCGTCTGCCAACACCAAGTCGGCTGCCACAGTTGACGATCTGGCCGACGTAGA
CCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.379

100

0.914
  recA Vibrio cholerae strain A1552

75.146

98.276

0.739
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.146

98.276

0.739
  recA Acinetobacter baumannii D1279779

73.563

100

0.736
  recA Acinetobacter baylyi ADP1

73.699

99.425

0.733
  recA Glaesserella parasuis strain SC1401

71.098

99.425

0.707
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.103

0.664
  recA Ralstonia pseudosolanacearum GMI1000

73.955

89.368

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

93.966

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

95.977

0.606
  recA Helicobacter pylori strain NCTC11637

64.22

93.966

0.603
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

94.253

0.589
  recA Streptococcus mitis SK321

58.046

100

0.58
  recA Streptococcus mitis NCTC 12261

57.759

100

0.578
  recA Streptococcus pneumoniae R6

59.697

94.828

0.566
  recA Streptococcus pneumoniae TIGR4

59.697

94.828

0.566
  recA Streptococcus pneumoniae Rx1

59.697

94.828

0.566
  recA Streptococcus pneumoniae D39

59.697

94.828

0.566
  recA Streptococcus mutans UA159

60.308

93.391

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563
  recA Streptococcus pyogenes NZ131

59.451

94.253

0.56
  recA Lactococcus lactis subsp. cremoris KW2

57.53

95.402

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.678

0.529

Multiple sequence alignment