Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | E5Q09_RS02785 | Genome accession | NZ_CP038991 |
| Coordinates | 550121..550498 (-) | Length | 125 a.a. |
| NCBI ID | WP_010887191.1 | Uniprot ID | Q9RWW9 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 545121..555498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q09_RS02755 | - | 545207..546526 (-) | 1320 | WP_162177565.1 | hypothetical protein | - |
| E5Q09_RS02760 | - | 546737..547531 (-) | 795 | WP_034349478.1 | DUF72 domain-containing protein | - |
| E5Q09_RS02765 | - | 547556..548233 (-) | 678 | WP_010887187.1 | glycerophosphodiester phosphodiesterase | - |
| E5Q09_RS02770 | - | 548338..549021 (+) | 684 | WP_010887188.1 | SDR family oxidoreductase | - |
| E5Q09_RS02775 | - | 549098..549865 (+) | 768 | WP_010887189.1 | sulfite exporter TauE/SafE family protein | - |
| E5Q09_RS02780 | - | 549862..550137 (+) | 276 | WP_027479532.1 | hypothetical protein | - |
| E5Q09_RS02785 | pilV | 550121..550498 (-) | 378 | WP_010887191.1 | type IV pilin protein | Machinery gene |
| E5Q09_RS02790 | - | 550865..552049 (+) | 1185 | WP_162177563.1 | HTTM domain-containing protein | - |
| E5Q09_RS02795 | pilV | 552092..552568 (-) | 477 | WP_034349477.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| E5Q09_RS02800 | dnaB | 553002..554348 (+) | 1347 | WP_010887194.1 | replicative DNA helicase | - |
| E5Q09_RS02805 | - | 554345..555097 (+) | 753 | WP_010887195.1 | NUDIX domain-containing protein | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 13107.95 Da Isoelectric Point: 5.7683
>NTDB_id=316643 E5Q09_RS02785 WP_010887191.1 550121..550498(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP
Nucleotide
Download Length: 378 bp
>NTDB_id=316643 E5Q09_RS02785 WP_010887191.1 550121..550498(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
95.2 |
0.408 |