Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D3X10_RS20750 Genome accession   NZ_CP032415
Coordinates   4403268..4404332 (+) Length   354 a.a.
NCBI ID   WP_025011663.1    Uniprot ID   A0A380BGW5
Organism   Shewanella algae strain VGH117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4398268..4409332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3X10_RS20735 (D3X10_20770) - 4398360..4399271 (+) 912 WP_051541763.1 peptidoglycan DD-metalloendopeptidase family protein -
  D3X10_RS20740 (D3X10_20775) rpoS 4399350..4400306 (+) 957 WP_025889143.1 RNA polymerase sigma factor RpoS -
  D3X10_RS20745 (D3X10_20780) mutS 4400393..4402951 (-) 2559 WP_370629043.1 DNA mismatch repair protein MutS -
  D3X10_RS20750 (D3X10_20785) recA 4403268..4404332 (+) 1065 WP_025011663.1 recombinase RecA Machinery gene
  D3X10_RS20755 (D3X10_20790) - 4404344..4404775 (+) 432 WP_306295060.1 regulatory protein RecX -
  D3X10_RS20760 (D3X10_20795) alaS 4405237..4407861 (+) 2625 WP_115390129.1 alanine--tRNA ligase -
  D3X10_RS20765 (D3X10_20800) - 4407884..4409122 (+) 1239 WP_117199771.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37678.21 Da        Isoelectric Point: 5.1879

>NTDB_id=315636 D3X10_RS20750 WP_025011663.1 4403268..4404332(+) (recA) [Shewanella algae strain VGH117]
MKIDPNKEKALNAVLGQIEKQFGKGSIMKLGEDRTMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKIAAPFKQADFQILYGQGINRTGELVDLGVAHKLVEKSGAWYSYKGDKIGQGRANAGKFLKENPEVAAEI
EAALRAKLLSKAEAAPASAETGEGNVDLETGEVF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=315636 D3X10_RS20750 WP_025011663.1 4403268..4404332(+) (recA) [Shewanella algae strain VGH117]
ATGAAAATAGATCCAAACAAAGAGAAGGCGCTGAACGCGGTTCTGGGACAGATAGAGAAGCAGTTCGGTAAAGGTTCTAT
CATGAAGCTGGGTGAAGACAGAACCATGGATGTCGAAACCATCTCTACCGGTTCGCTTTCTCTGGACGTGGCTCTGGGGG
CCGGCGGTCTGCCAATGGGCCGTATCGTTGAGATCTATGGTCCTGAATCTTCTGGTAAAACAACCCTGACACTGGAAGTG
ATTGCCGCAGCGCAGCGTGAAGGCAAAGTGTGTGCCTTTATCGATGCTGAACACGCACTGGATCCTATCTACGCCAAGAA
GCTGGGCGTGGATATCGATAACCTCCTGTGTTCTCAGCCAGATACAGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGA
CTCGCAGTGGCGCCGTCGATGTCATCATTGTTGACTCAGTGGCGGCGCTGACGCCCAAGGCTGAAATCGAAGGTGAAATC
GGTGATTCCCACATGGGGCTGGCGGCCCGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTCAAGCAGTCCAA
CACTCTGCTTATCTTCATCAACCAGATCCGGATGAAGATTGGGGTCATGTTCGGTAACCCTGAAACCACCACTGGTGGTA
ACGCCCTTAAGTTCTACGCTTCCGTTCGTCTCGATATCCGCCGTACCGGCGCTATCAAAGAGGGTGACGAGGTTGTTGGT
AACGAAACTCGGGTTAAAGTGGTTAAGAACAAGATTGCCGCCCCCTTCAAACAAGCCGATTTCCAAATTCTTTATGGTCA
GGGGATCAACCGTACCGGTGAGTTGGTTGACCTGGGCGTAGCCCACAAGCTGGTGGAAAAATCCGGCGCCTGGTACAGCT
ACAAAGGTGACAAGATAGGTCAAGGCCGCGCCAATGCCGGTAAGTTCCTCAAGGAAAATCCCGAAGTGGCAGCCGAAATC
GAAGCGGCACTGCGTGCTAAACTGCTCAGCAAAGCTGAAGCTGCTCCTGCCAGCGCCGAGACAGGTGAAGGCAATGTCGA
TCTGGAAACCGGAGAAGTCTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380BGW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.197

99.153

0.805
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.197

99.153

0.805
  recA Pseudomonas stutzeri DSM 10701

72.046

98.023

0.706
  recA Acinetobacter baylyi ADP1

69.364

97.74

0.678
  recA Glaesserella parasuis strain SC1401

68.286

98.87

0.675
  recA Acinetobacter baumannii D1279779

71.037

92.655

0.658
  recA Ralstonia pseudosolanacearum GMI1000

72.026

87.853

0.633
  recA Neisseria gonorrhoeae MS11

69.255

90.96

0.63
  recA Neisseria gonorrhoeae MS11

69.255

90.96

0.63
  recA Neisseria gonorrhoeae strain FA1090

69.255

90.96

0.63
  recA Streptococcus mitis SK321

61.176

96.045

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.012

94.915

0.579
  recA Streptococcus pyogenes NZ131

56.944

100

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.385

92.373

0.576
  recA Streptococcus pneumoniae Rx1

61.631

93.503

0.576
  recA Streptococcus pneumoniae TIGR4

61.631

93.503

0.576
  recA Streptococcus pneumoniae D39

61.631

93.503

0.576
  recA Streptococcus pneumoniae R6

61.631

93.503

0.576
  recA Helicobacter pylori strain NCTC11637

59.531

96.328

0.573
  recA Helicobacter pylori 26695

59.238

96.328

0.571
  recA Streptococcus mitis NCTC 12261

61.027

93.503

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.824

96.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.395

0.565
  recA Streptococcus mutans UA159

60

93.22

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.625

90.395

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.769

91.808

0.54

Multiple sequence alignment