Detailed information NTG0031531

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: LFERR_RS05245
• Genome accession: NC_011206
• Coordinates: 1019865..1020902 (+)
• Length: 345 a.a.
• NCBI ID: WP_012536446.1
• Uniprot ID: A0A2Z6IJB1
• Organism: Acidithiobacillus ferrooxidans ATCC 53993
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1014865..1025902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFERR_RS05220 (Lferr_1045)	sfsA	1015688..1016386 (-)	699	WP_012536441.1	DNA/RNA nuclease SfsA	-
LFERR_RS05225 (Lferr_1046)	gluQRS	1016397..1017287 (-)	891	WP_012536442.1	tRNA glutamyl-Q(34) synthetase GluQRS	-
LFERR_RS05230 (Lferr_1047)	thiL	1017349..1018371 (+)	1023	WP_012536443.1	thiamine-phosphate kinase	-
LFERR_RS05235 (Lferr_1048)	-	1018361..1018849 (+)	489	WP_012536444.1	phosphatidylglycerophosphatase A	-
LFERR_RS15945 (Lferr_1049)	-	1018846..1019691 (+)	846	WP_012536445.1	CinA family protein	-
LFERR_RS05245 (Lferr_1050)	recA	1019865..1020902 (+)	1038	WP_012536446.1	recombinase RecA	Machinery gene
LFERR_RS05250 (Lferr_1051)	-	1020903..1021355 (+)	453	WP_009564301.1	regulatory protein RecX	-
LFERR_RS05255 (Lferr_1052)	alaS	1021425..1024058 (+)	2634	WP_012536447.1	alanine--tRNA ligase	-
LFERR_RS05260 (Lferr_1053)	-	1024082..1024660 (-)	579	WP_012536448.1	hypothetical protein	-
LFERR_RS05265 (Lferr_1054)	-	1024657..1025175 (-)	519	WP_009564299.1	hydrogenase maturation protease	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 36899.03 Da
• Isoelectric Point: 5.9362

>NTDB_id=31531 LFERR_RS05245 WP_012536446.1 1019865..1020902(+) (recA) [Acidithiobacillus ferrooxidans ATCC 53993]
MDEQRSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
ASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE
QRIRAAAAGHPLAFAEEVAEPAAVG

Nucleotide

• Length: 1038 bp

>NTDB_id=31531 LFERR_RS05245 WP_012536446.1 1019865..1020902(+) (recA) [Acidithiobacillus ferrooxidans ATCC 53993]
ATGGATGAACAGCGCAGCAAGGCCCTTTCGGCGGCCCTGTCACAGATTGACAAACAGTTTGGTAAAGGCGCCGTCATGCG
TCTCGGTGATCATAACGCCATCAAGGACATCGAGGTCTACTCCACCGGCTCGCTGGGTCTGGATCTGGCGCTGGGTGTTG
GCGGACTGCCCCGGGGCCGGGTGGTAGAGATCTACGGGCCGGAATCTTCCGGTAAAACGACTCTCACCCTGCATGCCATA
GCCAGTTGTCAGGCTGCAGGCGGCACCGCCGCCTTTATCGATGCCGAGCACGCGCTCGACCCAGGCTATGCCCACAAGCT
CGGCGTCGATCTGGAAAACCTCCTGATCTCCCAGCCTGATACCGGCGAGCAGGCCCTGGAAATCGCCGACATGCTGGTGC
GCTCCGGTGCCGTGGACCTCATCGTCATCGACTCCGTGGCCGCTCTGACCCCCAAAGCGGAAATCGAAGGCGACATGGGC
GATTCCCACGTCGGTCTGCAGGCGCGTCTGATGAGTCAGGCGTTGCGCAAGCTCACCGCCAATATCTCCCGGACCAACAC
CCTGGTCATTTTCATCAACCAGATTCGCATGAAAATCGGGGTGATGTATGGCAGTCCGGAAACCACCACCGGTGGTAATG
CCCTTAAATTCTACGCTTCCGTGCGCCTTGATATCCGCCGCATCGGCGCGATCAAAAAGAGCGACGAAGTGGTAGGTAAC
GATACCCGCGTCAAGGTGGTCAAGAATAAGGTCGCACCACCTTTCCGCGAAGCCGAATTTGCCATCTATTACGGTGAAGG
CATCTCCCGACTGTCCGAACTGGTGGACCTCGGTGTGAAGTTCGACATCGTCGAAAAAAGCGGCGCCTGGTACAGTTACC
AGGGCGAGCGTATTGGTCAGGGCAAGGACAATGCCCGCCAGTACCTCAAGGAGCATCCGGAACTGGCGGCCAATATCGAG
CAGCGGATACGGGCAGCGGCAGCAGGACACCCCCTGGCCTTTGCCGAAGAGGTGGCAGAGCCCGCAGCGGTCGGCTAG

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-269)

3D structure

• AlphaFold DB: A0A2Z6IJB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	74.085	95.072	0.704
recA	Acinetobacter baylyi ADP1	74.691	93.913	0.701
recA	Acinetobacter baumannii D1279779	74.383	93.913	0.699
recA	Pseudomonas stutzeri DSM 10701	74.154	94.203	0.699
recA	Neisseria gonorrhoeae MS11	73.231	94.203	0.69
recA	Neisseria gonorrhoeae MS11	73.231	94.203	0.69
recA	Neisseria gonorrhoeae strain FA1090	73.231	94.203	0.69
recA	Glaesserella parasuis strain SC1401	71.429	95.362	0.681
recA	Vibrio cholerae strain A1552	71.296	93.913	0.67
recA	Vibrio cholerae O1 biovar El Tor strain E7946	71.296	93.913	0.67
recA	Helicobacter pylori strain NCTC11637	67.584	94.783	0.641
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	67.073	95.072	0.638
recA	Helicobacter pylori 26695	67.278	94.783	0.638
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.769	94.203	0.629
recA	Bacillus subtilis subsp. subtilis str. 168	66.25	92.754	0.614
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	64	94.203	0.603
recA	Streptococcus pneumoniae D39	60.704	98.841	0.6
recA	Streptococcus pneumoniae R6	60.704	98.841	0.6
recA	Streptococcus pneumoniae TIGR4	60.704	98.841	0.6
recA	Streptococcus pneumoniae Rx1	60.704	98.841	0.6
recA	Streptococcus mitis NCTC 12261	60.411	98.841	0.597
recA	Streptococcus pyogenes NZ131	62.577	94.493	0.591
recA	Latilactobacillus sakei subsp. sakei 23K	62.346	93.913	0.586
recA	Streptococcus mitis SK321	62.154	94.203	0.586
recA	Streptococcus mutans UA159	61.963	94.493	0.586
recA	Lactococcus lactis subsp. cremoris KW2	59.118	98.551	0.583