Detailed information NTG0314964

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4Z89_RS05200
• Genome accession: NZ_CP038453
• Coordinates: 1084952..1085944 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC-129
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1079952..1090944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4Z89_RS05170 (E4Z89_05195)	ispD	1080013..1080723 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E4Z89_RS05175 (E4Z89_05200)	ispF	1080723..1081202 (+)	480	WP_096962246.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4Z89_RS05180 (E4Z89_05205)	truD	1081199..1082248 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E4Z89_RS05185 (E4Z89_05210)	surE	1082229..1082990 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4Z89_RS05190 (E4Z89_05215)	pcm	1082984..1083610 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E4Z89_RS05195 (E4Z89_05220)	nlpD	1083795..1084889 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E4Z89_RS05200 (E4Z89_05225)	rpoS	1084952..1085944 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E4Z89_RS05205 (E4Z89_05230)	ygbN	1086038..1087402 (-)	1365	WP_000104429.1	GntP family transporter	-
E4Z89_RS05210 (E4Z89_05235)	ygbM	1087491..1088267 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
E4Z89_RS05215 (E4Z89_05240)	ygbL	1088272..1088910 (-)	639	WP_001278994.1	aldolase	-
E4Z89_RS05220 (E4Z89_05245)	otnK	1088907..1090169 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=314964 E4Z89_RS05200 WP_000081550.1 1084952..1085944(+) (rpoS) [Escherichia coli strain EC-129]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=314964 E4Z89_RS05200 WP_000081550.1 1084952..1085944(+) (rpoS) [Escherichia coli strain EC-129]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATTCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715