Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDG62_RS09055 Genome accession   NZ_CP032286
Coordinates   1301104..1302147 (-) Length   347 a.a.
NCBI ID   WP_087526753.1    Uniprot ID   A0A385N5L6
Organism   Acinetobacter sp. WCHA55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296104..1307147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS09025 (CDG62_09030) lpxD 1296282..1297349 (+) 1068 WP_087526749.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  CDG62_RS09030 (CDG62_09035) fabZ 1297357..1297842 (+) 486 WP_010326983.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CDG62_RS09035 (CDG62_09040) lpxA 1297839..1298627 (+) 789 WP_087526750.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  CDG62_RS09040 (CDG62_09045) - 1298687..1299532 (-) 846 WP_087526751.1 YbgF trimerization domain-containing protein -
  CDG62_RS09050 (CDG62_09055) - 1300395..1300997 (-) 603 WP_087526752.1 regulatory protein RecX -
  CDG62_RS09055 (CDG62_09060) recA 1301104..1302147 (-) 1044 WP_087526753.1 recombinase RecA Machinery gene
  CDG62_RS09060 (CDG62_09065) - 1302262..1302705 (-) 444 WP_087526754.1 RNA-binding S4 domain-containing protein -
  CDG62_RS09065 (CDG62_09070) - 1302698..1303372 (-) 675 WP_087526755.1 HAD-IA family hydrolase -
  CDG62_RS09070 (CDG62_09075) - 1304037..1304282 (+) 246 WP_004696593.1 hypothetical protein -
  CDG62_RS09075 (CDG62_09080) - 1304602..1304847 (+) 246 WP_087526756.1 hypothetical protein -
  CDG62_RS09080 (CDG62_09085) - 1305338..1306192 (+) 855 WP_087526757.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  CDG62_RS09085 (CDG62_09090) - 1306247..1306978 (+) 732 WP_087526758.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37660.09 Da        Isoelectric Point: 5.0471

>NTDB_id=314743 CDG62_RS09055 WP_087526753.1 1301104..1302147(-) (recA) [Acinetobacter sp. WCHA55]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIENLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANATPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=314743 CDG62_RS09055 WP_087526753.1 1301104..1302147(-) (recA) [Acinetobacter sp. WCHA55]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
CCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTAACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCTAAAGGTCGTATCATTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGCACATGTGCATTTATTGATGCAGAGCACGCTCTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGAAAATCTACTGGTTTCTCAGCCTGACCATGGTGAGCAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCTATTGACCTCATCGTTGTCGACTCTGTTGCAGCATTGACACCACGTGCAGAAATTGAAGGTGAAATGGGTGAC
TCACACATGGGCCTCCAAGCGCGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGTCGCGTAGGTCAAGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTCAAAAACAAAATGGCACCTCCATTCCGCGAAGCGCTCTTCCAAATCCTCTATGGTAAAGGTGT
CAACCATTTGGGTGAACTTGTAGATTTGGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCACCTTGAAGAAAACCCTCAATTGGCTGAAACCATTGAAAAA
ATCATTCGAGAAAAACTACTGACGACTGCAAATGCTACGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTCTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385N5L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.831

100

0.914
  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908
  recA Pseudomonas stutzeri DSM 10701

73.775

100

0.738
  recA Vibrio cholerae strain A1552

70.845

98.847

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.845

98.847

0.7
  recA Glaesserella parasuis strain SC1401

68.421

98.559

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614
  recA Helicobacter pylori strain NCTC11637

62.798

96.83

0.608
  recA Helicobacter pylori 26695

62.5

96.83

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.79

94.813

0.576
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Streptococcus mitis SK321

61.3

93.084

0.571
  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

56.973

97.118

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.895

93.084

0.539

Multiple sequence alignment