Detailed information NTG0031452

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GBEM_RS18125
• Genome accession: NC_011146
• Coordinates: 4151803..4152819 (+)
• Length: 338 a.a.
• NCBI ID: WP_012532059.1
• Uniprot ID: B5ED05
• Organism: Citrifermentans bemidjiense Bem
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4146803..4157819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBEM_RS18110 (Gbem_3627)	-	4147764..4148213 (+)	450	WP_012532056.1	phosphatidylglycerophosphatase A	-
GBEM_RS18115 (Gbem_3628)	-	4148210..4149454 (+)	1245	WP_012532057.1	competence/damage-inducible protein A	-
GBEM_RS18120 (Gbem_3629)	-	4149492..4151489 (+)	1998	WP_012532058.1	ATP-binding protein	-
GBEM_RS18125 (Gbem_3630)	recA	4151803..4152819 (+)	1017	WP_012532059.1	recombinase RecA	Machinery gene
GBEM_RS18130 (Gbem_3631)	-	4152823..4153974 (+)	1152	WP_012532060.1	type IV pilus twitching motility protein PilT	-
GBEM_RS18135 (Gbem_3632)	-	4153975..4154445 (+)	471	WP_012532061.1	regulatory protein RecX	-
GBEM_RS18140 (Gbem_3633)	alaS	4154577..4157204 (+)	2628	WP_012532062.1	alanine--tRNA ligase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 36324.88 Da
• Isoelectric Point: 5.8243

>NTDB_id=31452 GBEM_RS18125 WP_012532059.1 4151803..4152819(+) (recA) [Citrifermentans bemidjiense Bem]
MLDKDKAEKALDLAMSQIEKQFGKGAIMRLGNEEALPDIASIPTGSLSLDIALGVGGVPRGRVIEIFGPESSGKTTLALH
VISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGD
MGDSHMGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMI
GSRTRVKVVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKERIGQGRENSRLFLKEHPEITAE
IREKLVNPQQDAATPGAA

Nucleotide

• Length: 1017 bp

>NTDB_id=31452 GBEM_RS18125 WP_012532059.1 4151803..4152819(+) (recA) [Citrifermentans bemidjiense Bem]
ATGCTCGACAAGGATAAAGCGGAAAAGGCCCTGGACCTGGCGATGAGCCAGATTGAAAAGCAGTTCGGCAAAGGGGCCAT
CATGAGGCTCGGCAATGAAGAGGCGCTTCCCGACATCGCCTCCATCCCGACCGGGTCGCTCTCGCTCGACATCGCGCTCG
GCGTGGGAGGGGTGCCGCGCGGCCGCGTGATCGAGATCTTCGGACCGGAATCCTCCGGCAAGACCACCCTGGCCTTGCAC
GTCATCTCCGAGGCGCAGAAGCTGGGCGGAATCGCCGCCTTCGTGGACGCCGAGCACGCCCTCGATATCGGCTACGCCAG
AAAGCTCGGCGTGAAGACGGACGACCTCCTGGTCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGAGACCC
TGGTAAGAAGCGGCGCCATCGACGTCCTCGTCGTAGACTCCGTGGCCGCCCTGGTCCCCAAGGCTGAGATCGAGGGGGAC
ATGGGTGACTCCCACATGGGTCTGCAGGCGCGCCTCATGTCCCAGGCGCTCAGGAAGCTGACCGGCATCATCTCCAAGAG
CAACTGCTGCGTCATCTTCATCAACCAGATCAGGATGAAGATCGGCGTCATGTTCGGCAACCCCGAAACCACCACCGGCG
GCAACGCGCTCAAGTTCTACGCCTCGGTCCGCATGGACATCAGGAAGATCGCGGCGCTCAAGCAGGGCAACGACATGATC
GGCTCCCGCACCCGCGTCAAGGTAGTGAAGAACAAGGTCGCCCCCCCCTTCAAGGAAGTCGAGTTCGACATCCTCTACGG
CGAAGGGATCTCCAAGGAAGGGGACATCCTGGACCTCGCCGTGGAGCGCAACGTGGTTGAGAAAAGCGGCGCCTGGTTCT
CCTACGGCAAGGAGCGCATCGGGCAGGGGCGCGAAAACTCCCGCCTGTTCCTGAAGGAGCACCCGGAGATCACCGCCGAA
ATCAGGGAAAAGCTGGTCAACCCCCAACAAGACGCCGCAACTCCCGGCGCAGCCTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-271)

3D structure

• AlphaFold DB: B5ED05

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	65.982	100	0.666
recA	Ralstonia pseudosolanacearum GMI1000	71.429	91.124	0.651
recA	Helicobacter pylori strain NCTC11637	64.897	100	0.651
recA	Helicobacter pylori 26695	64.897	100	0.651
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.593	95.858	0.648
recA	Vibrio cholerae O1 biovar El Tor strain E7946	65.766	98.521	0.648
recA	Vibrio cholerae strain A1552	65.766	98.521	0.648
recA	Acinetobacter baylyi ADP1	65.861	97.929	0.645
recA	Bacillus subtilis subsp. subtilis str. 168	68.553	94.083	0.645
recA	Neisseria gonorrhoeae strain FA1090	67.601	94.97	0.642
recA	Neisseria gonorrhoeae MS11	67.601	94.97	0.642
recA	Neisseria gonorrhoeae MS11	67.601	94.97	0.642
recA	Acinetobacter baumannii D1279779	64.583	99.408	0.642
recA	Glaesserella parasuis strain SC1401	66.564	96.45	0.642
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	64	96.154	0.615
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.727	97.633	0.612
recA	Latilactobacillus sakei subsp. sakei 23K	63.043	95.266	0.601
recA	Streptococcus pneumoniae TIGR4	62.112	95.266	0.592
recA	Streptococcus pneumoniae D39	62.112	95.266	0.592
recA	Streptococcus pneumoniae R6	62.112	95.266	0.592
recA	Streptococcus pneumoniae Rx1	62.112	95.266	0.592
recA	Streptococcus mitis SK321	61.491	95.266	0.586
recA	Streptococcus mitis NCTC 12261	61.491	95.266	0.586
recA	Streptococcus pyogenes NZ131	60.923	96.154	0.586
recA	Streptococcus mutans UA159	60.308	96.154	0.58
recA	Lactococcus lactis subsp. cremoris KW2	59.627	95.266	0.568