Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ASUIS_RS12710 Genome accession   NZ_CP032100
Coordinates   2474228..2475277 (+) Length   349 a.a.
NCBI ID   WP_118887451.1    Uniprot ID   -
Organism   Arcobacter suis CECT 7833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2469228..2480277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUIS_RS12680 (ASUIS_2467) - 2469344..2470414 (+) 1071 WP_118887445.1 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein -
  ASUIS_RS12685 (ASUIS_2468) - 2470420..2470974 (-) 555 WP_118887446.1 hypothetical protein -
  ASUIS_RS12690 (ASUIS_2469) pseF 2470985..2471686 (-) 702 WP_118887447.1 pseudaminic acid cytidylyltransferase -
  ASUIS_RS12695 (ASUIS_2470) pseC 2471683..2472810 (-) 1128 WP_118887448.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ASUIS_RS12700 (ASUIS_2471) pseB 2472811..2473803 (-) 993 WP_118887449.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ASUIS_RS12705 (ASUIS_2472) - 2473921..2474127 (+) 207 WP_118887450.1 hypothetical protein -
  ASUIS_RS12710 (ASUIS_2473) recA 2474228..2475277 (+) 1050 WP_118887451.1 recombinase RecA Machinery gene
  ASUIS_RS12715 (ASUIS_2474) eno 2475408..2476682 (+) 1275 WP_118887452.1 phosphopyruvate hydratase -
  ASUIS_RS12720 (ASUIS_2475) - 2476692..2476934 (+) 243 WP_118887453.1 septum formation initiator family protein -
  ASUIS_RS12725 (ASUIS_2476) - 2476931..2477659 (+) 729 WP_118887454.1 AMIN domain-containing protein -
  ASUIS_RS12730 (ASUIS_2477) - 2477712..2478566 (-) 855 WP_118887455.1 biotin synthase -
  ASUIS_RS12735 (ASUIS_2478) - 2478553..2479068 (-) 516 WP_118887456.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37480.91 Da        Isoelectric Point: 4.7942

>NTDB_id=313754 ASUIS_RS12710 WP_118887451.1 2474228..2475277(+) (recA) [Arcobacter suis CECT 7833]
MDDNQRKSLDLAIKQIDKTFGKGTLIRLGDKVVVPTETISTGSLGLDLALGVGGLPKGRVIEVYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVGYAKNLGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLNKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKLAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLRDNPEIAKEIE
KKILESMGINDALISSSSDELEDAADLDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=313754 ASUIS_RS12710 WP_118887451.1 2474228..2475277(+) (recA) [Arcobacter suis CECT 7833]
ATGGATGACAATCAAAGAAAATCATTAGACTTGGCAATTAAACAAATAGACAAAACATTTGGAAAAGGAACTCTTATCAG
ACTTGGTGACAAAGTTGTAGTTCCAACTGAAACTATTAGTACAGGTTCATTAGGACTAGATTTAGCACTTGGTGTTGGTG
GTCTTCCAAAAGGAAGAGTTATTGAAGTTTATGGACCTGAATCTTCTGGTAAAACAACACTTACTCTTCATGCGATTGCT
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCCTTTATTGATGCGGAGCATGCTTTAGATGTTGGTTATGCAAAAAACTTAGG
TGTTGATACAGATAACTTACTTGTTTCTCAACCAGATTTTGGTGAGCAAGCTTTAGAAATTCTAGAAACAGTAATTAGAA
GTGGTGCTGTTGATTTAGTTGTAATTGACTCGGTTGCTGCCTTAACTCCAAAAGTTGAAATTGATGGTGATATGGATGAC
CAACAAGTTGGTGTTCAAGCAAGACTTATGTCTAAAGCTTTAAGAAAAATCACTGGTTTATTAAATAAAATGAATTGTAC
AGTTATATTCATTAACCAAATAAGAATGAAAATTGGAATGACAGGTTATGGAAGTCCAGAAACAACAACTGGTGGAAATG
CTCTTAAATTTTACTCATCAGTTAGACTTGATATTAGAAGAATTGCAACACTTAAACAAGGTGAAAATTCAATTGGAAAT
AGAGTAAAAGTAAAAGTAGTAAAAAATAAAGTTGCAGCTCCGTTTAAATTAGCAGAATTTGATATTATGTTTGGTGAGGG
TATTTCAAAAACTGGAGAATTAGTTGATTATGGTGTTAAACTTGACATTGTTGATAAAGCTGGTGCTTGGTTCTCTTATG
GAGATTCAAAAATTGGGCAAGGAAGAGAAAATTCAAAAGTATTTTTAAGAGACAATCCTGAAATAGCGAAAGAAATTGAG
AAAAAGATTCTTGAATCTATGGGAATTAATGATGCATTAATAAGTAGTAGTTCAGATGAACTTGAAGATGCAGCTGACTT
AGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.385

98.281

0.751
  recA Helicobacter pylori 26695

74.052

98.281

0.728
  recA Helicobacter pylori strain NCTC11637

74.052

98.281

0.728
  recA Acinetobacter baylyi ADP1

63.037

100

0.63
  recA Acinetobacter baumannii D1279779

64.286

96.275

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.964

95.415

0.61
  recA Vibrio cholerae strain A1552

60

100

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

100

0.61
  recA Neisseria gonorrhoeae MS11

61.584

97.708

0.602
  recA Neisseria gonorrhoeae strain FA1090

61.584

97.708

0.602
  recA Neisseria gonorrhoeae MS11

61.584

97.708

0.602
  recA Pseudomonas stutzeri DSM 10701

59.483

99.713

0.593
  recA Ralstonia pseudosolanacearum GMI1000

62.805

93.983

0.59
  recA Streptococcus pyogenes NZ131

56.983

100

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.329

94.842

0.582
  recA Glaesserella parasuis strain SC1401

57.759

99.713

0.576
  recA Streptococcus mitis NCTC 12261

57.143

100

0.573
  recA Streptococcus pneumoniae TIGR4

57.817

97.135

0.562
  recA Streptococcus pneumoniae D39

57.817

97.135

0.562
  recA Streptococcus pneumoniae Rx1

57.817

97.135

0.562
  recA Streptococcus pneumoniae R6

57.817

97.135

0.562
  recA Streptococcus mutans UA159

58.61

94.842

0.556
  recA Streptococcus mitis SK321

58.308

94.842

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

58.055

94.269

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.269

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

92.837

0.527

Multiple sequence alignment