Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HY04AAS1_RS06930 Genome accession   NC_011126
Coordinates   1285556..1286614 (-) Length   352 a.a.
NCBI ID   WP_012514413.1    Uniprot ID   -
Organism   Hydrogenobaculum sp. Y04AAS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280556..1291614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HY04AAS1_RS06905 (HY04AAS1_1367) - 1281487..1282116 (-) 630 WP_012514408.1 HAD-IA family hydrolase -
  HY04AAS1_RS06910 (HY04AAS1_1368) - 1282116..1282544 (-) 429 WP_012514409.1 RsmD family RNA methyltransferase -
  HY04AAS1_RS06915 (HY04AAS1_1369) - 1282607..1283200 (+) 594 WP_012514410.1 D-sedoheptulose 7-phosphate isomerase -
  HY04AAS1_RS06920 (HY04AAS1_1370) - 1283178..1284407 (+) 1230 WP_012514411.1 ComEC/Rec2 family competence protein -
  HY04AAS1_RS06925 (HY04AAS1_1371) - 1284412..1285551 (-) 1140 WP_012514412.1 aspartate aminotransferase family protein -
  HY04AAS1_RS06930 (HY04AAS1_1372) recA 1285556..1286614 (-) 1059 WP_012514413.1 recombinase RecA Machinery gene
  HY04AAS1_RS06935 (HY04AAS1_1373) gatC 1286622..1286906 (-) 285 WP_012514414.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HY04AAS1_RS06940 (HY04AAS1_1374) - 1286914..1289196 (-) 2283 WP_012514415.1 plasma-membrane proton-efflux P-type ATPase -
  HY04AAS1_RS08570 (HY04AAS1_1375) - 1289223..1289357 (-) 135 WP_012514416.1 hypothetical protein -
  HY04AAS1_RS06945 (HY04AAS1_1376) - 1289426..1290100 (-) 675 WP_012514417.1 flagellar basal body L-ring protein FlgH -
  HY04AAS1_RS06950 (HY04AAS1_1377) - 1290109..1291434 (-) 1326 WP_012514418.1 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38393.98 Da        Isoelectric Point: 8.7084

>NTDB_id=31345 HY04AAS1_RS06930 WP_012514413.1 1285556..1286614(-) (recA) [Hydrogenobaculum sp. Y04AAS1]
MDQEKKKALEATLTQVEKKYGKGAVMPMKAAYEKQTVNVIPTGILSVDKASGVGGLPRGKIIEIFGPESAGKTTLALYAI
AEAQKQGGIALFIDAEHALDPKYAVKLGVNLDAMYISQPDYGEQALEIADAFINSNTVDIIVVDSVAALVPKDELEGEMG
DAQVGKQARLMSQALRKLKGATNKSNTTLIFINQIREKIGQMYGNPETTPGGRALKFFADMRLEVRKTGDIKSGDNKIGY
SAKVRVVKNKVAPPFQEGEYEVYFGEGVCKICDLVNVAIEMGIIQKSGSWYSYQDTKIGQGKEQVKTFLNENKDVAKGIE
TKIRQAIYSSNNPTPSEENKKEQKAQAKKEEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=31345 HY04AAS1_RS06930 WP_012514413.1 1285556..1286614(-) (recA) [Hydrogenobaculum sp. Y04AAS1]
ATGGATCAAGAAAAGAAAAAAGCTCTAGAGGCAACTCTTACACAAGTAGAAAAGAAATACGGCAAAGGTGCCGTTATGCC
TATGAAGGCTGCCTATGAGAAGCAAACTGTAAACGTCATTCCCACAGGGATATTGTCTGTGGATAAAGCTTCGGGAGTAG
GTGGCTTACCAAGGGGCAAAATTATAGAAATATTTGGACCAGAATCTGCAGGTAAAACCACGCTAGCTCTTTATGCTATA
GCAGAAGCCCAAAAACAAGGTGGTATAGCACTTTTTATAGACGCAGAGCACGCTTTAGACCCGAAGTATGCCGTAAAGCT
TGGAGTAAATCTTGATGCTATGTATATATCTCAGCCGGATTATGGAGAGCAAGCTCTTGAGATAGCGGATGCTTTTATAA
ACTCAAACACAGTGGATATTATAGTAGTAGACTCAGTGGCAGCGTTGGTACCAAAAGATGAATTGGAAGGTGAAATGGGC
GATGCTCAAGTAGGTAAACAAGCAAGACTTATGTCTCAGGCTTTAAGAAAACTAAAGGGCGCCACCAACAAATCTAATAC
AACCCTTATATTTATAAATCAAATAAGAGAAAAGATAGGCCAAATGTACGGAAACCCAGAGACCACACCCGGTGGAAGAG
CTTTGAAGTTTTTTGCAGATATGAGGCTTGAAGTAAGAAAAACCGGAGACATAAAAAGCGGGGATAACAAGATAGGTTAT
AGCGCAAAGGTAAGGGTAGTAAAAAACAAAGTAGCACCACCTTTCCAAGAGGGTGAATACGAAGTTTACTTTGGCGAAGG
TGTGTGCAAAATATGTGACCTTGTAAATGTAGCAATAGAGATGGGTATAATTCAAAAAAGCGGTAGTTGGTACAGCTATC
AAGATACAAAGATAGGACAAGGCAAAGAGCAAGTAAAAACGTTCCTAAACGAAAACAAAGATGTAGCAAAAGGCATAGAA
ACCAAAATAAGACAAGCCATATACAGCTCCAACAACCCAACACCATCAGAAGAAAACAAAAAAGAGCAAAAAGCCCAAGC
CAAAAAAGAAGAAGCGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

56.305

96.875

0.545
  recA Bacillus subtilis subsp. subtilis str. 168

57.751

93.466

0.54
  recA Streptococcus pneumoniae TIGR4

53.824

100

0.54
  recA Streptococcus pneumoniae Rx1

53.824

100

0.54
  recA Streptococcus pneumoniae D39

53.824

100

0.54
  recA Streptococcus pneumoniae R6

53.824

100

0.54
  recA Streptococcus mitis SK321

54.179

98.58

0.534
  recA Acinetobacter baylyi ADP1

54.651

97.727

0.534
  recA Glaesserella parasuis strain SC1401

52.975

100

0.531
  recA Lactococcus lactis subsp. cremoris KW2

57.187

92.898

0.531
  recA Ralstonia pseudosolanacearum GMI1000

57.187

92.898

0.531
  recA Pseudomonas stutzeri DSM 10701

54.678

97.159

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.495

94.034

0.531
  recA Streptococcus mitis NCTC 12261

53.89

98.58

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.07

97.727

0.528
  recA Streptococcus mutans UA159

56.923

92.33

0.526
  recA Acinetobacter baumannii D1279779

55.758

93.75

0.523
  recA Streptococcus pyogenes NZ131

56.615

92.33

0.523
  recA Neisseria gonorrhoeae MS11

56.481

92.045

0.52
  recA Neisseria gonorrhoeae strain FA1090

56.481

92.045

0.52
  recA Neisseria gonorrhoeae MS11

56.481

92.045

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.545

93.75

0.511
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.916

94.318

0.509
  recA Vibrio cholerae strain A1552

53.916

94.318

0.509
  recA Helicobacter pylori strain NCTC11637

52.059

96.591

0.503
  recA Helicobacter pylori 26695

52.059

96.591

0.503

Multiple sequence alignment