Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D1367_RS27940 Genome accession   NZ_CP031941
Coordinates   6248482..6249561 (-) Length   359 a.a.
NCBI ID   WP_118170154.1    Uniprot ID   -
Organism   Nostoc sphaeroides strain Kutzing En     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6243482..6254561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1367_RS27930 - 6244002..6245978 (-) 1977 WP_118170149.1 sensor histidine kinase -
  D1367_RS33005 - 6246460..6246588 (+) 129 WP_267255596.1 hypothetical protein -
  D1367_RS33400 - 6247377..6248198 (+) 822 WP_118170151.1 WGxxGxxG-CTERM domain-containing protein -
  D1367_RS27940 recA 6248482..6249561 (-) 1080 WP_118170154.1 recombinase RecA Machinery gene
  D1367_RS27945 - 6250067..6251620 (+) 1554 WP_118170156.1 HNH endonuclease -
  D1367_RS27950 - 6251693..6252121 (-) 429 WP_118170159.1 type II toxin-antitoxin system VapC family toxin -
  D1367_RS27955 - 6252114..6252347 (-) 234 WP_118170162.1 hypothetical protein -
  D1367_RS27960 xseA 6252490..6253749 (+) 1260 WP_118170164.1 exodeoxyribonuclease VII large subunit -
  D1367_RS27965 xseB 6253750..6253977 (+) 228 WP_118170167.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38532.87 Da        Isoelectric Point: 4.9023

>NTDB_id=312850 D1367_RS27940 WP_118170154.1 6248482..6249561(-) (recA) [Nostoc sphaeroides strain Kutzing En]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDTHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
YGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAD
EIKKLVREKLDKGAVVSANSVAKASEEDEEEEVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=312850 D1367_RS27940 WP_118170154.1 6248482..6249561(-) (recA) [Nostoc sphaeroides strain Kutzing En]
ATGGCTATCAACACCGATACTTCAGGCAAGCAAAAAGCGCTGACTATGGTGCTTAACCAGATTGAGCGCAGCTTTGGTAA
AGGAGCAATCATGCGCCTGGGCGATGCCACCCGGATGCGGGTGGAGACAATTTCTAGTGGGGCGCTCACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTAATTGAAATTTACGGCCCGGAAAGTTCCGGTAAGACTACAGTAGCGCTA
CATGCGCTCGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTTGTTGATGCTGAACACGCCCTTGATCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCCCAACCTGACACAGGCGAATCAGCTTTAGAAATTGTCGATC
AGCTGGTTCGCTCTGCTGCGGTTGATATTGTAGTCATTGACTCAGTAGCAGCACTGGTTCCCCGCGCTGAAATTGAAGGC
GATATGGGTGACACCCACGTTGGTTTGCAAGCGCGATTAATGAGCCAAGCCCTACGTAAAATTACTGGCAACATTGGTAA
ATCTGGTTGTACAGTAATTTTCATCAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGTCCAGAAACTACTACTG
GCGGTAACGCATTGAAATTTTACGCTTCGGTGCGTTTGGATATTCGCCGAATTCAAACCTTGAAAAAAGGTACAGATGAA
TATGGTAATCGCGTTAAAGTCAAAGTCGCCAAAAATAAAGTAGCGCCGCCCTTTAGAATAGCGGAATTTGACATTATTTT
TGGCAAAGGTATTTCTACCTTGGGTTGTGTTGTTGACTTAGCAGAAGAAACTGGCATTATTGTCCGCAAAGGAGCTTGGT
ATAGTTACAACGGCGATAATATCTCTCAAGGACGAGACAACGCCATTAAGTATCTAGAAGAAAAGCCTGAATTCGCTGAC
GAAATTAAGAAACTGGTGCGGGAAAAACTAGATAAAGGTGCTGTTGTTTCTGCTAACTCTGTAGCTAAAGCCAGTGAAGA
AGATGAAGAGGAAGAAGTCGATTTAGAACCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.401

96.657

0.613
  recA Acinetobacter baumannii D1279779

62.644

96.936

0.607
  recA Pseudomonas stutzeri DSM 10701

63.824

94.708

0.604
  recA Neisseria gonorrhoeae MS11

61.19

98.329

0.602
  recA Neisseria gonorrhoeae MS11

61.19

98.329

0.602
  recA Neisseria gonorrhoeae strain FA1090

61.19

98.329

0.602
  recA Ralstonia pseudosolanacearum GMI1000

63.444

92.201

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Streptococcus pneumoniae TIGR4

58.592

98.886

0.579
  recA Streptococcus pneumoniae D39

58.592

98.886

0.579
  recA Streptococcus pneumoniae R6

58.592

98.886

0.579
  recA Streptococcus pneumoniae Rx1

58.592

98.886

0.579
  recA Glaesserella parasuis strain SC1401

59.483

96.936

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.028

98.886

0.574
  recA Streptococcus pyogenes NZ131

58.074

98.329

0.571
  recA Streptococcus mutans UA159

59.078

96.657

0.571
  recA Helicobacter pylori 26695

61.747

92.479

0.571
  recA Helicobacter pylori strain NCTC11637

61.747

92.479

0.571
  recA Streptococcus mitis NCTC 12261

57.746

98.886

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.841

96.1

0.565
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

91.365

0.546
  recA Lactococcus lactis subsp. cremoris KW2

60.062

89.972

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment