Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0851_RS18720 Genome accession   NZ_CP031848
Coordinates   3985998..3987044 (+) Length   348 a.a.
NCBI ID   WP_117620475.1    Uniprot ID   -
Organism   Marinobacter sp. Arc7-DN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3980998..3992044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0851_RS18700 (D0851_18700) - 3981424..3982062 (+) 639 WP_117619980.1 LysE family translocator -
  D0851_RS18705 (D0851_18705) fdxA 3982143..3982466 (-) 324 WP_117620474.1 ferredoxin FdxA -
  D0851_RS18710 (D0851_18710) mutS 3982619..3985249 (-) 2631 WP_117619981.1 DNA mismatch repair protein MutS -
  D0851_RS18715 (D0851_18715) - 3985332..3985832 (+) 501 WP_117619982.1 nicotinamide-nucleotide amidohydrolase family protein -
  D0851_RS18720 (D0851_18720) recA 3985998..3987044 (+) 1047 WP_117620475.1 recombinase RecA Machinery gene
  D0851_RS18725 (D0851_18725) - 3987062..3987532 (+) 471 WP_117619983.1 flavodoxin family protein -
  D0851_RS18730 (D0851_18730) - 3987548..3987925 (-) 378 WP_117619984.1 PilZ domain-containing protein -
  D0851_RS18735 (D0851_18735) - 3988143..3990551 (+) 2409 WP_117619985.1 Lon protease family protein -
  D0851_RS18740 (D0851_18740) fixJ 3990591..3991217 (+) 627 WP_117619986.1 response regulator FixJ -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37428.12 Da        Isoelectric Point: 5.8266

>NTDB_id=311861 D0851_RS18720 WP_117620475.1 3985998..3987044(+) (recA) [Marinobacter sp. Arc7-DN-1]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPIYAEKLGVNVNELLVSQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGKANACKFLEENLDIANEIEA
AVRDKLMPKPVSRKEAVEAPAEASGELL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=311861 D0851_RS18720 WP_117620475.1 3985998..3987044(+) (recA) [Marinobacter sp. Arc7-DN-1]
ATGGAAGACAACCGCAAGAAAGCATTGAGCGCAGCACTTGGCCAGATTGAGCGCCAGTTCGGCAAGGGCGCCGTGATGAA
AATGGGCGACCAGCCCCGTGAAGCCATTCCTGCGGTCTCCACGGGCTCCCTTGGGCTGGATGTTGCCCTGGGTATTGGCG
GCCTGCCTTACGGTCGTATCTGTGAGATTTACGGTCCGGAAAGTTCCGGTAAAACCACATTGACCCTGCAGGTGATTGCC
GAGGCCCAAAAGGCCGGTAAAACCTGTGCCTTCGTGGATGCTGAGCATGCCCTGGACCCGATCTACGCCGAAAAGCTGGG
TGTCAACGTAAACGAGCTGCTGGTGTCCCAGCCGGATACCGGTGAACAGGCGCTGGAAATCTGCGATATGCTGGTTCGCT
CCAACGCGGTAGACGTGATCATCGTCGACTCCGTTGCCGCCCTGACGCCGAAAGCGGAAATCGAAGGTGAAATGGGCGAT
AGCCACGTCGGCCTTCAGGCACGGCTGATGTCCCAGGCGCTGCGTAAACTGACAGGTAACGTCAAGCATGCCAACTGTCT
GTTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTTATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACGCCC
TGAAGTTTTACTCCTCCGTGCGTCTGGATATCCGCCGCATTGGCTCGGTAAAAGACGGCGATGAAGTGGTAGGCAATGAG
ACCCGGGTGAAAGTGGTCAAGAACAAGGTGTCACCGCCGTTCAAGCAGGCTGAATTCCAGATCATGTACGGCAAGGGCAT
TTACCACATGGCCGAAGTGCTCGATATGGGCGTGAAAGAAGGCTTTGTTGACAAGTCCGGCGCCTGGTATGCCTACAAGG
GTGACAAGATCGGCCAGGGTAAGGCTAACGCCTGCAAGTTCCTGGAAGAAAACCTGGATATTGCCAACGAAATCGAAGCT
GCGGTGCGTGATAAGCTGATGCCGAAGCCGGTCTCCAGGAAAGAAGCCGTTGAGGCACCGGCGGAAGCCAGCGGCGAATT
GCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.94

95.977

0.767
  recA Acinetobacter baylyi ADP1

69.828

100

0.698
  recA Glaesserella parasuis strain SC1401

71.818

94.828

0.681
  recA Ralstonia pseudosolanacearum GMI1000

69.412

97.701

0.678
  recA Acinetobacter baumannii D1279779

72.171

93.966

0.678
  recA Vibrio cholerae strain A1552

72.171

93.966

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

93.966

0.678
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.103

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Helicobacter pylori 26695

60

99.138

0.595
  recA Helicobacter pylori strain NCTC11637

60

99.138

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

95.69

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

59.317

92.529

0.549
  recA Streptococcus mutans UA159

58.154

93.391

0.543
  recA Streptococcus pneumoniae Rx1

57.975

93.678

0.543
  recA Streptococcus pneumoniae D39

57.975

93.678

0.543
  recA Streptococcus pneumoniae R6

57.975

93.678

0.543
  recA Streptococcus pneumoniae TIGR4

57.975

93.678

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

93.103

0.54
  recA Streptococcus mitis NCTC 12261

57.895

92.816

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.538

93.391

0.537
  recA Streptococcus mitis SK321

57.585

92.816

0.534
  recA Streptococcus pyogenes NZ131

56.402

94.253

0.532

Multiple sequence alignment