Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CJA_RS10820 Genome accession   NC_010995
Coordinates   2564442..2565488 (-) Length   348 a.a.
NCBI ID   WP_041551454.1    Uniprot ID   -
Organism   Cellvibrio japonicus Ueda107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2559442..2570488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJA_RS10800 (CJA_2226) kdsA 2560489..2561340 (-) 852 WP_012487826.1 3-deoxy-8-phosphooctulonate synthase -
  CJA_RS10805 (CJA_2227) - 2561386..2563008 (-) 1623 WP_012487827.1 CTP synthase -
  CJA_RS10810 (CJA_2228) - 2563238..2563684 (-) 447 WP_041551453.1 regulatory protein RecX -
  CJA_RS10815 (CJA_2229) - 2563722..2564297 (-) 576 WP_012487829.1 DUF4136 domain-containing protein -
  CJA_RS10820 (CJA_2230) recA 2564442..2565488 (-) 1047 WP_041551454.1 recombinase RecA Machinery gene
  CJA_RS10825 (CJA_2231) - 2565620..2566135 (-) 516 WP_012487831.1 CinA family protein -
  CJA_RS10830 (CJA_2234) - 2566514..2568430 (-) 1917 WP_012487834.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  CJA_RS10835 (CJA_2235) - 2568537..2569469 (-) 933 WP_012487835.1 family 2A encapsulin nanocompartment shell protein -
  CJA_RS10840 (CJA_2236) - 2569671..2569931 (-) 261 WP_012487836.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37307.84 Da        Isoelectric Point: 5.2980

>NTDB_id=31125 CJA_RS10820 WP_041551454.1 2564442..2565488(-) (recA) [Cellvibrio japonicus Ueda107]
MDANKEKALQAALGQIERQFGKGTVMRMGDREQMVIPAISTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLTLQVIA
EAQRQGGTCAFIDAEHALDPIYATKLGVNVGDLIVSQPDTGEQALEVTDMLVRSGAIDVLVVDSVAALTPRAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGEEVIGSE
TRVKVVKNKVAPPFKQAEFQILYGSGINRMGEIVDYGVKLGLIDKAGAWYSYQGNKIGQGKNNVIKFLQENQAIAQELEQ
KVRSELLATQALSLSAGGEDVSDEAEIL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=31125 CJA_RS10820 WP_041551454.1 2564442..2565488(-) (recA) [Cellvibrio japonicus Ueda107]
ATGGATGCGAATAAAGAGAAAGCGTTGCAAGCTGCGTTAGGCCAGATCGAGCGTCAGTTTGGCAAGGGAACTGTGATGCG
TATGGGGGACCGCGAGCAAATGGTAATCCCCGCTATTTCTACCGGTTCCCTGGGGCTGGACGTTGCATTGGGTATCGGGG
GACTACCTAAAGGCCGCATTATAGAAATTTATGGGCCAGAATCCTCCGGTAAGACGACCTTAACCCTGCAAGTGATTGCT
GAAGCCCAACGCCAGGGTGGAACCTGTGCATTTATTGATGCCGAACATGCCCTTGACCCCATTTATGCAACCAAGCTTGG
CGTTAATGTAGGCGATTTGATTGTCTCCCAACCTGATACCGGTGAGCAGGCCTTGGAAGTGACCGATATGCTGGTCCGTT
CCGGCGCTATCGACGTTTTGGTGGTTGACTCGGTTGCGGCCCTGACTCCCCGGGCTGAAATTGAAGGGGAAATGGGCGAT
CACCATGTCGGCTTACAGGCTCGCCTGATGTCCCAAGCCCTGCGGAAAATCACTGGTAATATCAAAAATGCCAACTGTCT
GGTGATATTTATTAACCAGATCCGTATGAAAATCGGTGTTATGTTCGGTAATCCGGAAACCACCACGGGCGGTAATGCGC
TCAAGTTTTATGCTTCTGTACGCCTTGATATCCGTCGTGTTGGTGCAGTTAAAGAGGGGGAGGAAGTTATTGGCTCTGAA
ACTCGCGTCAAGGTAGTTAAAAACAAGGTGGCCCCTCCCTTTAAGCAAGCAGAGTTTCAAATCCTTTATGGTTCGGGTAT
CAACCGCATGGGGGAAATTGTTGATTATGGCGTTAAGTTAGGGCTGATTGACAAAGCGGGCGCCTGGTACAGTTACCAGG
GGAACAAAATCGGCCAGGGCAAAAACAACGTTATCAAGTTCCTCCAGGAAAACCAGGCAATTGCCCAGGAACTGGAGCAA
AAAGTGCGCTCGGAACTCCTGGCCACACAGGCACTCTCATTAAGTGCTGGTGGAGAGGATGTTTCCGATGAGGCAGAAAT
ACTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.488

98.851

0.776
  recA Acinetobacter baumannii D1279779

73.699

99.425

0.733
  recA Acinetobacter baylyi ADP1

72.989

100

0.73
  recA Vibrio cholerae strain A1552

70.029

99.713

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.029

99.713

0.698
  recA Glaesserella parasuis strain SC1401

69.096

98.563

0.681
  recA Neisseria gonorrhoeae MS11

66.86

98.851

0.661
  recA Neisseria gonorrhoeae MS11

66.86

98.851

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.86

98.851

0.661
  recA Ralstonia pseudosolanacearum GMI1000

71.656

90.23

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.055

93.966

0.621
  recA Helicobacter pylori strain NCTC11637

64.526

93.966

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.115

0.601
  recA Helicobacter pylori 26695

63.914

93.966

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

92.241

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.25

91.954

0.563
  recA Streptococcus mutans UA159

60.062

92.816

0.557
  recA Streptococcus pneumoniae D39

59.146

94.253

0.557
  recA Streptococcus pneumoniae R6

59.146

94.253

0.557
  recA Streptococcus pneumoniae TIGR4

59.146

94.253

0.557
  recA Streptococcus pneumoniae Rx1

59.146

94.253

0.557
  recA Streptococcus mitis NCTC 12261

58.537

94.253

0.552
  recA Streptococcus pyogenes NZ131

59.443

92.816

0.552
  recA Streptococcus mitis SK321

58.232

94.253

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.846

93.391

0.54
  recA Lactococcus lactis subsp. cremoris KW2

55.521

93.678

0.52

Multiple sequence alignment