Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0C16_RS07005 Genome accession   NZ_CP031728
Coordinates   1638825..1639865 (-) Length   346 a.a.
NCBI ID   WP_151031649.1    Uniprot ID   -
Organism   Cellvibrio sp. KY-GH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633825..1644865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS06985 (D0C16_07065) kdsA 1634767..1635618 (-) 852 WP_151031645.1 3-deoxy-8-phosphooctulonate synthase -
  D0C16_RS06990 (D0C16_07070) - 1635691..1637310 (-) 1620 WP_151031646.1 CTP synthase -
  D0C16_RS06995 (D0C16_07075) - 1637523..1637984 (-) 462 WP_151031647.1 regulatory protein RecX -
  D0C16_RS07000 (D0C16_07080) - 1638062..1638646 (-) 585 WP_151031648.1 DUF4136 domain-containing protein -
  D0C16_RS07005 (D0C16_07085) recA 1638825..1639865 (-) 1041 WP_151031649.1 recombinase RecA Machinery gene
  D0C16_RS07010 (D0C16_07090) - 1640085..1640678 (-) 594 WP_151031650.1 hypothetical protein -
  D0C16_RS07015 (D0C16_07095) - 1641006..1643132 (+) 2127 WP_151031651.1 winged helix-turn-helix domain-containing protein -
  D0C16_RS07020 (D0C16_07100) pncC 1643183..1643665 (-) 483 WP_151031652.1 nicotinamide-nucleotide amidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36994.44 Da        Isoelectric Point: 5.1308

>NTDB_id=310786 D0C16_RS07005 WP_151031649.1 1638825..1639865(-) (recA) [Cellvibrio sp. KY-GH-1]
MDANKEKALQAALSQIERQFGKGTVMRMGDKEDLVIPAISTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLTLQVIA
EAQRQGGTCAFIDAEHALDPIYATKLGVNVDDLIVSQPDTGEQALEVTDMLVRSGAVDVLVIDSVAALTPRAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGEEVIGSE
TRVKVVKNKVAPPFKQAEFQILYGSGINRMGEVVDYGVKLGLIDKAGAWYSYQGNKIGQGKNNVMKFLQENPAVSQELEQ
KVRAELLATPALSLSASGGDVEDVDA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=310786 D0C16_RS07005 WP_151031649.1 1638825..1639865(-) (recA) [Cellvibrio sp. KY-GH-1]
ATGGATGCGAATAAAGAAAAGGCGTTACAAGCGGCGCTGAGCCAGATCGAGCGTCAATTTGGTAAAGGAACTGTAATGCG
TATGGGGGACAAGGAAGATCTAGTGATTCCTGCGATCTCTACTGGTTCGTTAGGGTTGGACGTTGCTTTGGGAATCGGTG
GATTACCCAAGGGTCGTATTATTGAAATCTATGGTCCGGAATCATCCGGCAAAACCACGCTTACTCTGCAAGTTATTGCT
GAAGCGCAGCGTCAGGGTGGTACTTGTGCATTTATTGATGCCGAGCACGCTCTTGATCCTATTTATGCCACCAAGTTGGG
TGTAAATGTCGATGATCTGATCGTTTCCCAACCAGACACTGGCGAACAGGCATTGGAAGTTACCGATATGCTGGTGCGCT
CTGGCGCAGTCGATGTGCTGGTGATTGATTCCGTAGCTGCCTTGACTCCCCGCGCAGAAATCGAGGGCGAGATGGGTGAT
CATCACGTAGGTTTGCAGGCACGCTTGATGTCCCAAGCGTTGCGCAAAATCACCGGTAATATCAAAAATGCCAATTGCCT
GGTGATTTTTATTAACCAGATTCGTATGAAAATTGGCGTTATGTTCGGCAACCCGGAAACGACCACTGGTGGTAATGCGT
TAAAGTTCTATGCCTCTGTACGTCTGGATATTCGTCGCGTTGGTGCTGTGAAAGAAGGTGAGGAGGTGATTGGTTCTGAA
ACTCGTGTAAAAGTAGTTAAGAACAAAGTGGCTCCGCCGTTTAAGCAGGCTGAATTCCAGATCCTTTATGGATCAGGTAT
TAACCGCATGGGTGAGGTTGTTGATTATGGCGTTAAGCTCGGCCTGATTGACAAGGCTGGTGCCTGGTATAGCTATCAAG
GCAACAAGATTGGTCAGGGTAAAAACAATGTAATGAAGTTTTTACAAGAAAACCCTGCTGTGTCGCAGGAGTTGGAGCAA
AAAGTTCGAGCTGAACTTTTGGCTACACCAGCGCTCTCACTAAGTGCAAGCGGTGGTGATGTAGAAGACGTAGACGCGTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.665

95.665

0.772
  recA Acinetobacter baylyi ADP1

73.761

99.133

0.731
  recA Acinetobacter baumannii D1279779

75.38

95.087

0.717
  recA Vibrio cholerae strain A1552

69.942

100

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.942

100

0.699
  recA Glaesserella parasuis strain SC1401

69.912

97.977

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.515

95.376

0.682
  recA Neisseria gonorrhoeae MS11

69.538

93.931

0.653
  recA Neisseria gonorrhoeae MS11

69.538

93.931

0.653
  recA Neisseria gonorrhoeae strain FA1090

69.538

93.931

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.361

94.509

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.665

0.604
  recA Helicobacter pylori strain NCTC11637

64.198

93.642

0.601
  recA Helicobacter pylori 26695

63.58

93.642

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

62.813

92.486

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

92.775

0.569
  recA Streptococcus mutans UA159

59.692

93.931

0.561
  recA Streptococcus pyogenes NZ131

59.202

94.22

0.558
  recA Streptococcus pneumoniae D39

58.841

94.798

0.558
  recA Streptococcus pneumoniae R6

58.841

94.798

0.558
  recA Streptococcus pneumoniae TIGR4

58.841

94.798

0.558
  recA Streptococcus pneumoniae Rx1

58.841

94.798

0.558
  recA Streptococcus mitis SK321

58.841

94.798

0.558
  recA Streptococcus mitis NCTC 12261

58.537

94.798

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.154

93.931

0.546
  recA Lactococcus lactis subsp. cremoris KW2

56.748

94.22

0.535

Multiple sequence alignment