Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0B88_RS11830 Genome accession   NZ_CP031727
Coordinates   2821882..2822925 (+) Length   347 a.a.
NCBI ID   WP_007640549.1    Uniprot ID   I3ICG9
Organism   Cellvibrio sp. KY-YJ-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2816882..2827925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B88_RS11805 (D0B88_11900) - 2817385..2817738 (-) 354 WP_007640450.1 hypothetical protein -
  D0B88_RS11815 (D0B88_11910) - 2818249..2819700 (+) 1452 WP_151057382.1 rhomboid family intramembrane serine protease -
  D0B88_RS11820 (D0B88_11915) - 2819687..2821204 (+) 1518 WP_151057384.1 hypothetical protein -
  D0B88_RS11825 (D0B88_11920) - 2821261..2821758 (+) 498 WP_151057386.1 CinA family protein -
  D0B88_RS11830 (D0B88_11925) recA 2821882..2822925 (+) 1044 WP_007640549.1 recombinase RecA Machinery gene
  D0B88_RS11835 (D0B88_11930) - 2823137..2823703 (+) 567 WP_151057388.1 DUF4136 domain-containing protein -
  D0B88_RS11840 (D0B88_11935) - 2823765..2824238 (+) 474 WP_225318348.1 regulatory protein RecX -
  D0B88_RS11845 (D0B88_11940) - 2824491..2826110 (+) 1620 WP_040391605.1 CTP synthase -
  D0B88_RS11850 (D0B88_11945) kdsA 2826183..2827034 (+) 852 WP_151057390.1 3-deoxy-8-phosphooctulonate synthase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37243.89 Da        Isoelectric Point: 5.2980

>NTDB_id=310772 D0B88_RS11830 WP_007640549.1 2821882..2822925(+) (recA) [Cellvibrio sp. KY-YJ-3]
MDANKEKALQAALSQIERQFGKGTVMRMGDKEQVAIPAISTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLTLQVIA
EAQRMGGTCAFIDAEHALDPIYASKLGVNVEDLIISQPDTGEQALEVTDMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSE
TRVKVVKNKVAPPFKQAEFQILYGSGINRMGEVVDYGVKLGMIDKAGAWYSYQGNKIGQGKNNVMKFLQENPIIAQELEQ
RVRTELLATPALSLSAGGAEVTDDVEM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=310772 D0B88_RS11830 WP_007640549.1 2821882..2822925(+) (recA) [Cellvibrio sp. KY-YJ-3]
ATGGATGCGAATAAAGAGAAGGCCCTGCAGGCTGCATTAAGTCAAATCGAGCGTCAATTCGGTAAAGGTACCGTAATGCG
TATGGGCGACAAAGAACAAGTCGCCATTCCTGCCATTTCAACTGGCTCCTTGGGGCTGGATGTCGCTCTCGGCATTGGCG
GTTTACCCAAGGGCCGTATTATTGAAATTTATGGTCCTGAATCATCTGGTAAAACGACCCTGACTCTGCAGGTTATTGCT
GAAGCTCAACGTATGGGTGGGACCTGCGCATTCATTGACGCCGAACATGCACTTGACCCTATCTATGCCTCCAAGCTCGG
CGTCAATGTTGAAGATTTGATTATTTCCCAGCCAGACACCGGCGAACAAGCTCTGGAAGTGACCGATATGCTGGTACGTT
CCGGTGCAGTGGATGTTCTGGTTGTTGACTCAGTTGCTGCATTGACACCACGCGCTGAAATTGAAGGTGAAATGGGTGAC
CATCACGTGGGTTTGCAAGCGCGTTTAATGTCGCAAGCGCTGCGTAAAATCACTGGTAATATTAAAAACGCTAACTGCCT
GGTGATTTTCATCAACCAGATCCGGATGAAAATTGGCGTTATGTTCGGCAACCCCGAAACTACCACCGGTGGTAATGCAC
TCAAGTTTTATGCTTCAGTACGTTTGGATATTCGCCGTATTGGTGCAGTGAAAGAGGGTGAGGAAGTTGTGGGTTCTGAG
ACTCGCGTGAAGGTGGTGAAAAACAAAGTTGCACCGCCATTCAAACAAGCTGAATTCCAAATTCTCTATGGTTCTGGCAT
TAACCGTATGGGTGAAGTGGTCGATTACGGCGTTAAGTTGGGCATGATTGATAAAGCGGGTGCCTGGTATAGCTATCAAG
GCAACAAGATTGGTCAGGGTAAAAACAACGTGATGAAATTTTTACAGGAAAATCCGATTATTGCGCAAGAGCTTGAGCAG
CGCGTGCGCACCGAACTTCTTGCTACGCCCGCACTATCTCTAAGTGCCGGTGGTGCAGAAGTGACCGATGATGTAGAAAT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3ICG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.098

100

0.781
  recA Acinetobacter baumannii D1279779

73.699

99.712

0.735
  recA Acinetobacter baylyi ADP1

72.911

100

0.729
  recA Vibrio cholerae strain A1552

70.605

100

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.605

100

0.706
  recA Glaesserella parasuis strain SC1401

70.058

99.135

0.695
  recA Ralstonia pseudosolanacearum GMI1000

72.121

95.101

0.686
  recA Neisseria gonorrhoeae MS11

66.86

99.135

0.663
  recA Neisseria gonorrhoeae MS11

66.86

99.135

0.663
  recA Neisseria gonorrhoeae strain FA1090

66.86

99.135

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.055

94.236

0.622
  recA Helicobacter pylori strain NCTC11637

63.609

94.236

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.389

0.599
  recA Helicobacter pylori 26695

62.997

94.236

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

92.507

0.571
  recA Streptococcus pneumoniae R6

59.451

94.524

0.562
  recA Streptococcus pneumoniae TIGR4

59.451

94.524

0.562
  recA Streptococcus pneumoniae Rx1

59.451

94.524

0.562
  recA Streptococcus pneumoniae D39

59.451

94.524

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

91.931

0.559
  recA Streptococcus mitis NCTC 12261

59.146

94.524

0.559
  recA Streptococcus mutans UA159

59.385

93.66

0.556
  recA Streptococcus mitis SK321

58.841

94.524

0.556
  recA Streptococcus pyogenes NZ131

58.589

93.948

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.934

91.931

0.542
  recA Lactococcus lactis subsp. cremoris KW2

55.077

93.66

0.516

Multiple sequence alignment