Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0B54_RS16935 Genome accession   NZ_CP031704
Coordinates   3772145..3773212 (-) Length   355 a.a.
NCBI ID   WP_117292444.1    Uniprot ID   A0A346N3W6
Organism   Solimonas sp. K1W22B-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3767145..3778212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS16905 (D0B54_16905) - 3767264..3768397 (-) 1134 WP_117292439.1 NAD(P)/FAD-dependent oxidoreductase -
  D0B54_RS16910 (D0B54_16910) - 3768492..3769166 (+) 675 WP_117292440.1 TetR/AcrR family transcriptional regulator -
  D0B54_RS16915 (D0B54_16915) - 3769216..3769701 (+) 486 WP_117292441.1 thioesterase family protein -
  D0B54_RS16920 (D0B54_16920) - 3769806..3770564 (-) 759 WP_117292442.1 SDR family NAD(P)-dependent oxidoreductase -
  D0B54_RS16925 (D0B54_16925) - 3770704..3771681 (+) 978 WP_240433454.1 patatin-like phospholipase family protein -
  D0B54_RS16930 (D0B54_16930) - 3771641..3772123 (-) 483 WP_240433455.1 regulatory protein RecX -
  D0B54_RS16935 (D0B54_16935) recA 3772145..3773212 (-) 1068 WP_117292444.1 recombinase RecA Machinery gene
  D0B54_RS16940 (D0B54_16940) - 3773382..3774413 (+) 1032 WP_162932496.1 PHB depolymerase family esterase -
  D0B54_RS16945 (D0B54_16945) thpR 3774486..3775073 (-) 588 WP_117292446.1 RNA 2',3'-cyclic phosphodiesterase -
  D0B54_RS16950 (D0B54_16950) - 3775066..3775569 (-) 504 WP_117292447.1 CinA family protein -
  D0B54_RS16955 (D0B54_16955) - 3775746..3776933 (+) 1188 WP_117292448.1 acetyl-CoA C-acyltransferase -
  D0B54_RS16960 (D0B54_16960) - 3777018..3778004 (+) 987 WP_117292449.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37671.38 Da        Isoelectric Point: 7.7602

>NTDB_id=310632 D0B54_RS16935 WP_117292444.1 3772145..3773212(-) (recA) [Solimonas sp. K1W22B-7]
MDPNRQKALEAALSQIEKQFGKGAIMRMTPGEAIKDVEVISTGSLTLDMALGIGGLPRGRVVEIYGPESSGKTTLTLHAV
AECQKAGGVAAFIDAEHALDIAYAQKLGVKIDELVISQPDTGEQALEICDMLVRSNSVDIIVIDSVAALVPKAEIEGEMG
DSSVGVQARLMSQALRKLTGNISRSKCMVVFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRRTGAIKKGEEVIGN
ETRVKVVKNKMAPPFREAHFEILYNEGISKLGELIDLGVDNGLVEKSGAWFAYDGNKIGQGKDNARTYLRDNPEIAAKLE
ASIREKLNPSKAAIAVAASAAAAAPASGKAAATAK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=310632 D0B54_RS16935 WP_117292444.1 3772145..3773212(-) (recA) [Solimonas sp. K1W22B-7]
ATGGATCCGAACCGCCAGAAAGCCCTAGAAGCCGCGTTGTCACAGATCGAGAAGCAGTTCGGCAAGGGCGCCATCATGAG
GATGACGCCGGGCGAAGCCATCAAGGACGTCGAGGTCATTTCCACCGGTTCGCTGACGCTGGACATGGCGCTGGGCATCG
GCGGCCTGCCGCGCGGCCGCGTGGTGGAGATCTATGGTCCTGAATCCTCGGGTAAAACCACGCTGACCCTGCATGCCGTG
GCCGAGTGCCAGAAGGCCGGCGGCGTCGCCGCCTTCATCGACGCCGAGCATGCGCTGGACATCGCCTACGCCCAGAAGCT
CGGCGTGAAGATCGACGAGCTGGTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGGTGC
GCTCCAACAGCGTCGACATCATCGTCATCGACTCCGTCGCCGCCCTGGTGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GATTCCAGCGTCGGCGTGCAGGCGCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCAACATCTCGCGCTCCAAGTG
CATGGTCGTCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAACG
CGCTGAAGTTCTATTCCTCGGTGCGCCTGGATATCCGCCGCACCGGTGCGATCAAGAAGGGCGAAGAGGTCATCGGCAAC
GAGACCCGTGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCCGCGAAGCCCACTTCGAGATCCTCTACAACGAGGG
CATCTCCAAGCTCGGCGAGCTGATCGACCTGGGCGTGGACAACGGCCTGGTCGAGAAGTCCGGTGCCTGGTTCGCCTATG
ACGGCAACAAGATCGGCCAGGGCAAGGACAACGCGCGCACCTACCTGCGCGACAACCCCGAGATCGCCGCAAAGCTGGAA
GCCTCGATCCGCGAGAAGCTGAATCCGTCGAAGGCAGCGATCGCTGTGGCCGCTTCGGCTGCTGCCGCCGCTCCGGCCAG
CGGCAAGGCTGCCGCTACGGCCAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346N3W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

69.679

96.62

0.673
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.679

96.62

0.673
  recA Neisseria gonorrhoeae MS11

73.457

91.268

0.67
  recA Neisseria gonorrhoeae strain FA1090

73.457

91.268

0.67
  recA Neisseria gonorrhoeae MS11

73.457

91.268

0.67
  recA Pseudomonas stutzeri DSM 10701

72.477

92.113

0.668
  recA Acinetobacter baylyi ADP1

72.171

92.113

0.665
  recA Ralstonia pseudosolanacearum GMI1000

74.359

87.887

0.654
  recA Glaesserella parasuis strain SC1401

68.343

95.211

0.651
  recA Acinetobacter baumannii D1279779

70.336

92.113

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.964

93.803

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

64.087

90.986

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

92.394

0.577
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Streptococcus pyogenes NZ131

57.849

96.901

0.561
  recA Helicobacter pylori strain NCTC11637

60.366

92.394

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

90.423

0.558
  recA Helicobacter pylori 26695

60.061

92.394

0.555
  recA Streptococcus pneumoniae D39

60.061

92.394

0.555
  recA Streptococcus pneumoniae Rx1

60.061

92.394

0.555
  recA Streptococcus pneumoniae R6

60.061

92.394

0.555
  recA Streptococcus pneumoniae TIGR4

60.061

92.394

0.555
  recA Streptococcus mitis NCTC 12261

60.615

91.549

0.555
  recA Streptococcus mitis SK321

60.615

91.549

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.692

91.549

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

91.268

0.521

Multiple sequence alignment