Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0Y49_RS09255 Genome accession   NZ_CP031701
Coordinates   1823575..1824666 (+) Length   363 a.a.
NCBI ID   WP_117285994.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain IDCC9203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818575..1829666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y49_RS09235 (D0Y49_09235) - 1819777..1821012 (+) 1236 WP_117285992.1 M16 family metallopeptidase -
  D0Y49_RS09240 (D0Y49_09240) ymfI 1821013..1821741 (+) 729 WP_117285993.1 elongation factor P 5-aminopentanone reductase -
  D0Y49_RS09245 (D0Y49_09245) - 1821800..1822849 (+) 1050 WP_087283948.1 helix-turn-helix domain-containing protein -
  D0Y49_RS09250 (D0Y49_09250) pgsA 1822849..1823412 (+) 564 WP_004893865.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D0Y49_RS09255 (D0Y49_09255) recA 1823575..1824666 (+) 1092 WP_117285994.1 recombinase RecA Machinery gene
  D0Y49_RS09260 (D0Y49_09260) rny 1824793..1826415 (+) 1623 WP_117285995.1 ribonuclease Y -
  D0Y49_RS09265 (D0Y49_09265) - 1826517..1827659 (+) 1143 WP_011161760.1 glycosyltransferase family 4 protein -
  D0Y49_RS09270 (D0Y49_09270) - 1827677..1828342 (-) 666 WP_095182944.1 YigZ family protein -
  D0Y49_RS09275 (D0Y49_09275) - 1828465..1829652 (+) 1188 WP_004893874.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39357.91 Da        Isoelectric Point: 5.6327

>NTDB_id=310582 D0Y49_RS09255 WP_117285994.1 1823575..1824666(+) (recA) [Lactobacillus johnsonii strain IDCC9203]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVK
EKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDEKIEKK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=310582 D0Y49_RS09255 WP_117285994.1 1823575..1824666(+) (recA) [Lactobacillus johnsonii strain IDCC9203]
TTGGCTAAAGATGATAAAAAGAAGGCTTTAGACATTGCCTTAAAAAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTGAT
GCGCATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCAGCTCTTGGAGTTG
GTGGCTATCCTCGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACAACTGTGGCTCTTCATGCTGTT
GCAGAAGTTCAGAAGCGTGGAGGAACGGCAGCTTATATCGATGCGGAAAATGCGATGGATCCTGCTTATGCCGAAGCATT
AGGTGTTGATATTGATTCCTTAATTTTATCTCAACCAAACACTGGTGAAGAAGGTTTGCAAATTGCAGATACGCTTATTG
CGAGTGGTGCAATTGATATCTTGGTTGTGGATTCCGTGGCTGCGTTAGTACCAAGAGCCGAAATTGACGGTGACATGGGA
GATTCACATGTTGGTTTGCAAGCCAGATTAATGAGTCAGGCTTTACGTAAACTCTCAGGAAATATCTCTAAAACTAAAAC
TATTGCTGTTTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGAAATCCAGAAACTACTCCTGGTGGACGTG
CTTTGAAGTTTTACTCTACGATTAGATTAGAAGTACGTAGAGCAGAACAAATTAAACAAGGATCAGACGTAATTGGTAAC
CGAGTTAAATTAAAGGTTGTAAAAAATAAAGTTGCGCCTCCATTTAAAGTGGCAGAAGTCGATATCATGTATGGGAAAGG
TATTTCTCAAACTGGTGAGTTAATTGATATGGCTGCTGATAAAGATATCATTAAGAAAGCTGGCTCGTGGTATTCATATG
GGGATGATCGCATTGGACAAGGCCGCGAGAATGCTAAGCAATATCTAGAAGAGCATCCTGATGTTTACGAAGAAGTAAAA
GAAAAAGTTCGTGAAGCTTATGGAATTGATGCTAAAGCAATTGAAGAACGGGAAAATCCTGAAAAGGTAAAACAAGACAA
GGAAGTACCAGTAAACAAAGATGCTTCCGATGAAAAAATTGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

98.898

0.758
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

90.909

0.664
  recA Streptococcus mutans UA159

65.565

100

0.656
  recA Streptococcus pneumoniae R6

65.097

99.449

0.647
  recA Streptococcus pneumoniae TIGR4

65.097

99.449

0.647
  recA Streptococcus pneumoniae Rx1

65.097

99.449

0.647
  recA Streptococcus pneumoniae D39

65.097

99.449

0.647
  recA Streptococcus mitis NCTC 12261

66.571

95.592

0.636
  recA Streptococcus pyogenes NZ131

70.213

90.634

0.636
  recA Streptococcus mitis SK321

68.693

90.634

0.623
  recA Lactococcus lactis subsp. cremoris KW2

67.173

90.634

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

90.358

0.57
  recA Neisseria gonorrhoeae strain FA1090

61.261

91.736

0.562
  recA Neisseria gonorrhoeae MS11

61.261

91.736

0.562
  recA Neisseria gonorrhoeae MS11

61.261

91.736

0.562
  recA Acinetobacter baumannii D1279779

57.602

94.215

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.981

0.534
  recA Pseudomonas stutzeri DSM 10701

54.062

98.347

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

90.634

0.526
  recA Acinetobacter baylyi ADP1

59.317

88.705

0.526
  recA Helicobacter pylori 26695

58.589

89.807

0.526
  recA Helicobacter pylori strain NCTC11637

58.589

89.807

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

88.705

0.504
  recA Vibrio cholerae strain A1552

56.832

88.705

0.504
  recA Glaesserella parasuis strain SC1401

54.985

91.185

0.501
  recA Ralstonia pseudosolanacearum GMI1000

58.147

86.226

0.501

Multiple sequence alignment