Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GLOV_RS15630 Genome accession   NC_010814
Coordinates   3382482..3383492 (-) Length   336 a.a.
NCBI ID   WP_012471191.1    Uniprot ID   B3E9Z2
Organism   Trichlorobacter lovleyi SZ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3377482..3388492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLOV_RS15610 (Glov_3157) - 3377616..3379598 (-) 1983 WP_012471187.1 CsgG/HfaB family protein -
  GLOV_RS15615 (Glov_3158) - 3379595..3380791 (-) 1197 WP_012471188.1 flagellar assembly protein T N-terminal domain-containing protein -
  GLOV_RS15620 (Glov_3159) - 3380840..3381304 (-) 465 WP_012471189.1 regulatory protein RecX -
  GLOV_RS15625 (Glov_3160) - 3381291..3382454 (-) 1164 WP_012471190.1 type IV pilus twitching motility protein PilT -
  GLOV_RS15630 (Glov_3161) recA 3382482..3383492 (-) 1011 WP_012471191.1 recombinase RecA Machinery gene
  GLOV_RS15635 (Glov_3162) - 3383583..3384065 (-) 483 WP_012471192.1 CinA family protein -
  GLOV_RS15640 (Glov_3163) larC 3384055..3385239 (-) 1185 WP_012471193.1 nickel pincer cofactor biosynthesis protein LarC -
  GLOV_RS15645 (Glov_3164) larB 3385241..3385990 (-) 750 WP_012471194.1 nickel pincer cofactor biosynthesis protein LarB -
  GLOV_RS15650 (Glov_3165) - 3386192..3387475 (+) 1284 WP_012471195.1 3-isopropylmalate dehydratase large subunit -
  GLOV_RS15655 (Glov_3166) - 3387504..3388031 (+) 528 WP_012471196.1 3-isopropylmalate dehydratase small subunit 2 -
  GLOV_RS15660 (Glov_3167) - 3388129..3388314 (+) 186 WP_012471197.1 twin-arginine translocase TatA/TatE family subunit -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36269.81 Da        Isoelectric Point: 6.3036

>NTDB_id=31052 GLOV_RS15630 WP_012471191.1 3382482..3383492(-) (recA) [Trichlorobacter lovleyi SZ]
MSDKNKAIELALSQIEKQFGKGAIMRLGNDEVLPGVESISTGAISLDLALGVGGVPRGRVIEVYGPESSGKTTLALHIVA
EAQKSGGIAAFVDAEHALDINYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIATLKQGDQVIGSR
TRVKVVKNKVAPPFKEAEFDILYGEGISRTGDVLDLAVDRNIIDKSGAWFSYNKERIGQGRENSRQFLKENPVMLAEIEA
RLMELIKPAPKEEKAE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=31052 GLOV_RS15630 WP_012471191.1 3382482..3383492(-) (recA) [Trichlorobacter lovleyi SZ]
GTGAGTGATAAAAACAAGGCCATAGAGCTGGCACTTTCCCAGATTGAAAAGCAGTTTGGCAAAGGCGCCATCATGCGACT
CGGCAATGATGAGGTGCTGCCCGGTGTAGAGTCGATCTCAACCGGAGCCATATCTCTCGATCTGGCCCTGGGGGTGGGCG
GTGTGCCCCGCGGCCGGGTAATTGAGGTCTATGGCCCTGAATCTTCCGGCAAGACCACCCTGGCCCTGCATATTGTGGCT
GAAGCCCAGAAAAGCGGCGGTATTGCGGCTTTTGTGGATGCAGAGCATGCCCTGGATATCAATTATGCCCGCAAGCTGGG
GGTAAAGACCGATGACCTGCTGGTTTCCCAGCCGGACACCGGAGAACAGGCGCTTGAGATTGCCGAAACGCTGGTACGGA
GCGGTGCCATTGACGTGCTGGTGATTGACTCGGTTGCGGCTCTGGTACCCAAGGCCGAGATCGAGGGTGAGATGGGGGAC
TCCCATGTCGGTCTGCAGGCCCGTCTGATGTCACAGGCGTTGCGCAAACTAACCGGCATTATCTCCAAATCCAACTGCTG
CGTGATCTTTATCAACCAGATCAGGATGAAGATCGGTGTGATGTTTGGTAACCCGGAGACCACCACCGGTGGTAACGCAT
TGAAATTCTATGCCTCGGTCAGGCTCGACATCCGCAAGATCGCAACCCTTAAGCAGGGGGATCAGGTGATCGGTTCCCGT
ACCAGGGTCAAAGTGGTTAAGAACAAGGTCGCACCACCTTTTAAAGAGGCCGAGTTTGATATCCTCTATGGTGAAGGAAT
CTCCCGTACCGGTGATGTGCTGGATCTGGCGGTGGATCGCAATATCATCGACAAGAGCGGGGCCTGGTTCTCCTACAATA
AAGAGCGGATCGGACAAGGTCGCGAAAACTCCCGTCAGTTCCTGAAGGAAAATCCGGTCATGCTGGCAGAGATTGAGGCC
AGGTTGATGGAACTGATCAAACCAGCACCCAAGGAAGAAAAAGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3E9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.203

94.048

0.67
  recA Neisseria gonorrhoeae strain FA1090

69.04

96.131

0.664
  recA Neisseria gonorrhoeae MS11

69.04

96.131

0.664
  recA Neisseria gonorrhoeae MS11

69.04

96.131

0.664
  recA Helicobacter pylori 26695

65.579

100

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.401

94.345

0.655
  recA Helicobacter pylori strain NCTC11637

65.282

100

0.655
  recA Acinetobacter baylyi ADP1

68.323

95.833

0.655
  recA Glaesserella parasuis strain SC1401

66.667

97.321

0.649
  recA Acinetobacter baumannii D1279779

67.702

95.833

0.649
  recA Pseudomonas stutzeri DSM 10701

67.812

95.238

0.646
  recA Bacillus subtilis subsp. subtilis str. 168

66.049

96.429

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.815

96.429

0.625
  recA Vibrio cholerae strain A1552

64.815

96.429

0.625
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.417

97.024

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

98.214

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

65.372

91.964

0.601
  recA Streptococcus pyogenes NZ131

62.037

96.429

0.598
  recA Streptococcus mitis SK321

61.846

96.726

0.598
  recA Streptococcus pneumoniae Rx1

61.846

96.726

0.598
  recA Streptococcus pneumoniae D39

61.846

96.726

0.598
  recA Streptococcus pneumoniae R6

61.846

96.726

0.598
  recA Streptococcus pneumoniae TIGR4

61.846

96.726

0.598
  recA Streptococcus mitis NCTC 12261

61.538

96.726

0.595
  recA Streptococcus mutans UA159

61.42

96.429

0.592
  recA Lactococcus lactis subsp. cremoris KW2

60.615

96.726

0.586

Multiple sequence alignment