Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0N50_RS04945 Genome accession   NZ_CP031695
Coordinates   1089047..1090114 (+) Length   355 a.a.
NCBI ID   WP_013203498.1    Uniprot ID   D8MW07
Organism   Erwinia billingiae strain TH88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084047..1095114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0N50_RS04920 (D0N50_04945) - 1084245..1085093 (-) 849 WP_151036725.1 transporter substrate-binding domain-containing protein -
  D0N50_RS04925 (D0N50_04950) - 1085123..1086313 (-) 1191 WP_151036726.1 M20 family metallopeptidase -
  D0N50_RS04930 (D0N50_04955) - 1086411..1087544 (+) 1134 WP_151036727.1 PLP-dependent aspartate aminotransferase family protein -
  D0N50_RS04935 (D0N50_04960) tam 1087570..1088343 (+) 774 WP_013203500.1 trans-aconitate 2-methyltransferase -
  D0N50_RS04940 (D0N50_04965) pncC 1088454..1088948 (+) 495 WP_151036728.1 nicotinamide-nucleotide amidase -
  D0N50_RS04945 (D0N50_04970) recA 1089047..1090114 (+) 1068 WP_013203498.1 recombinase RecA Machinery gene
  D0N50_RS04950 (D0N50_04975) - 1090253..1090768 (+) 516 WP_151036729.1 regulatory protein RecX -
  D0N50_RS04955 (D0N50_04980) alaS 1090908..1093535 (+) 2628 WP_151036730.1 alanine--tRNA ligase -
  D0N50_RS04960 (D0N50_04985) csrA 1093781..1093966 (+) 186 WP_004155916.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37982.49 Da        Isoelectric Point: 5.0468

>NTDB_id=310446 D0N50_RS04945 WP_013203498.1 1089047..1090114(+) (recA) [Erwinia billingiae strain TH88]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANSGNFLKENPAIANEI
EAKLRATLLTNPDTKPDFVATAAELDETSETNENF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=310446 D0N50_RS04945 WP_013203498.1 1089047..1090114(+) (recA) [Erwinia billingiae strain TH88]
ATGGCTATCGACGAAAACAAGCAAAAAGCACTGGCAGCAGCGCTGGGCCAGATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGACGTGGAAACGATTTCGACCGGTTCCCTGTCACTGGATATCGCACTGGGTG
CGGGCGGCCTGCCAATGGGGCGTATCGTTGAAATCTATGGCCCTGAGTCTTCCGGTAAAACCACGCTGACCCTGCAGGTG
ATTGCTTCTGCACAGCGTAAAGGTAAAACCTGTGCGTTTATCGACGCAGAGCATGCCCTTGACCCGGTCTATGCCAAAAA
GCTTGGCGTGGATATCGATAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGTTGG
CCCGCTCAGGTGCGGTAGACGTGATCATCGTTGACTCCGTGGCTGCACTGACGCCGAAAGCAGAAATCGAAGGTGAAATT
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAAAACTCTGG
CACCCTGCTGATCTTCATCAACCAGATTCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATTGGCGCGATTAAAGAAGGTGACGAAGTCGTCGGC
AGCGAAACCCGCGTGAAGGTAGTGAAGAACAAAATTGCTGCGCCATTCAAGCAGGCTGAGTTCCAGATCATGTATGGCGA
AGGCATCAACATTTACGGTGAGCTGGTAGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCCGGTGCCTGGTACAGCT
ACAACGGCGATAAGATTGGTCAGGGTAAAGCGAACTCAGGCAACTTCCTGAAAGAGAACCCGGCTATCGCCAACGAAATT
GAAGCTAAACTGCGTGCTACGCTGCTGACCAACCCGGACACCAAGCCTGATTTTGTGGCAACGGCGGCCGAGCTGGATGA
AACCAGCGAAACCAACGAAAACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D8MW07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.503

97.465

0.794
  recA Vibrio cholerae strain A1552

81.503

97.465

0.794
  recA Pseudomonas stutzeri DSM 10701

74.336

95.493

0.71
  recA Acinetobacter baylyi ADP1

71.552

98.028

0.701
  recA Glaesserella parasuis strain SC1401

69.628

98.31

0.685
  recA Acinetobacter baumannii D1279779

73.78

92.394

0.682
  recA Neisseria gonorrhoeae MS11

69.231

91.549

0.634
  recA Neisseria gonorrhoeae MS11

69.231

91.549

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.231

91.549

0.634
  recA Ralstonia pseudosolanacearum GMI1000

69.841

88.732

0.62
  recA Streptococcus mutans UA159

58.475

99.718

0.583
  recA Helicobacter pylori strain NCTC11637

60.831

94.93

0.577
  recA Helicobacter pylori 26695

60.534

94.93

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

92.113

0.572
  recA Streptococcus pneumoniae Rx1

61.963

91.831

0.569
  recA Streptococcus pneumoniae D39

61.963

91.831

0.569
  recA Streptococcus pneumoniae TIGR4

61.963

91.831

0.569
  recA Streptococcus pneumoniae R6

61.963

91.831

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.141

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

93.521

0.566
  recA Streptococcus mitis NCTC 12261

61.656

91.831

0.566
  recA Streptococcus pyogenes NZ131

60.976

92.394

0.563
  recA Streptococcus mitis SK321

61.35

91.831

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.42

91.268

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.043

91.831

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

91.549

0.546

Multiple sequence alignment