Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPSH_RS00735 Genome accession   NC_010698
Coordinates   147929..148972 (+) Length   347 a.a.
NCBI ID   WP_000952094.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 142929..153972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS00700 (HPSH_00735) - 143518..143736 (+) 219 WP_012443279.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPSH_RS00705 (HPSH_00740) ccoP 143738..144616 (+) 879 WP_000346899.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPSH_RS00710 (HPSH_00745) - 144627..144833 (+) 207 WP_000670495.1 DUF4006 family protein -
  HPSH_RS00715 (HPSH_00755) - 144934..145518 (+) 585 WP_001221986.1 hypothetical protein -
  HPSH_RS00720 (HPSH_00760) - 145530..146111 (+) 582 WP_000660380.1 hypothetical protein -
  HPSH_RS00725 (HPSH_00765) - 146200..146967 (+) 768 WP_000506334.1 hypothetical protein -
  HPSH_RS00730 (HPSH_00770) - 146964..147830 (-) 867 WP_000626336.1 menaquinone biosynthesis family protein -
  HPSH_RS00735 (HPSH_00775) recA 147929..148972 (+) 1044 WP_000952094.1 recombinase RecA Machinery gene
  HPSH_RS00740 (HPSH_00780) eno 148984..150264 (+) 1281 WP_000955686.1 phosphopyruvate hydratase -
  HPSH_RS00745 (HPSH_00785) - 150257..150532 (+) 276 WP_000146212.1 hypothetical protein -
  HPSH_RS00750 (HPSH_00790) - 150548..151144 (+) 597 WP_012443281.1 AMIN domain-containing protein -
  HPSH_RS00755 (HPSH_00795) - 151149..151637 (+) 489 WP_001216269.1 shikimate kinase -
  HPSH_RS00760 (HPSH_00800) - 151658..152614 (+) 957 WP_000952256.1 PDC sensor domain-containing protein -
  HPSH_RS00765 (HPSH_00805) - 152611..153723 (-) 1113 WP_000022432.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37683.43 Da        Isoelectric Point: 5.7176

>NTDB_id=30913 HPSH_RS00735 WP_000952094.1 147929..148972(+) (recA) [Helicobacter pylori Shi470]
MAIDEDKQKAISLAIKQIDKIFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=30913 HPSH_RS00735 WP_000952094.1 147929..148972(+) (recA) [Helicobacter pylori Shi470]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTGGCGATCAAACAAATTGATAAGATTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
GCTAGGCGTGGATACGGAAAACTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAGATCACCGGTGTTTTGCACAAGATGAA
CACCACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTATTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGCATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment