Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NPUN_RS14850 Genome accession   NC_010628
Coordinates   3601438..3602517 (+) Length   359 a.a.
NCBI ID   WP_012409437.1    Uniprot ID   -
Organism   Nostoc punctiforme PCC 73102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3596438..3607517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPUN_RS14825 (Npun_R2909) - 3598321..3598632 (-) 312 WP_012409432.1 ATP-binding protein -
  NPUN_RS14830 (Npun_R2910) xseB 3598812..3599039 (-) 228 WP_012409433.1 exodeoxyribonuclease VII small subunit -
  NPUN_RS14835 (Npun_R2911) xseA 3599088..3600326 (-) 1239 WP_041565417.1 exodeoxyribonuclease VII large subunit -
  NPUN_RS14840 (Npun_R2912) - 3600388..3600666 (-) 279 WP_012409435.1 type II toxin-antitoxin system RelE family toxin -
  NPUN_RS14845 (Npun_R2913) - 3600653..3600946 (-) 294 WP_012409436.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  NPUN_RS14850 (Npun_F2914) recA 3601438..3602517 (+) 1080 WP_012409437.1 recombinase RecA Machinery gene
  NPUN_RS14855 (Npun_R2915) - 3602737..3603459 (-) 723 WP_012409438.1 FHA domain-containing protein -
  NPUN_RS14860 (Npun_R2916) - 3604272..3605876 (-) 1605 WP_012409439.1 serine/threonine-protein kinase -
  NPUN_RS14870 (Npun_R2917) - 3606279..3607109 (-) 831 WP_012409440.1 squalene/phytoene synthase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38530.90 Da        Isoelectric Point: 4.9060

>NTDB_id=30787 NPUN_RS14850 WP_012409437.1 3601438..3602517(+) (recA) [Nostoc punctiforme PCC 73102]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
YGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
EIKKLVREKLDKGAVVSANSVAKASEEDEEEEVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=30787 NPUN_RS14850 WP_012409437.1 3601438..3602517(+) (recA) [Nostoc punctiforme PCC 73102]
ATGGCTATCAACACCGATACTTCTGGCAAGCAAAAAGCGCTGACTATGGTGCTCAACCAGATTGAGCGCAGCTTTGGTAA
AGGAGCAATTATGCGCCTGGGCGATGCCACCCGGATGCGGGTGGAGACAATTTCCAGTGGGGCGCTTACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTAATAGAAATTTATGGGCCGGAAAGTTCCGGTAAGACTACAGTAGCGCTA
CATGCGCTCGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTTGTTGATGCTGAACACGCCCTAGACCCTACTTATGC
TGCTGCATTGGGTGTAGATATTGACAATTTGCTGATTTCCCAACCTGACACTGGCGAATCAGCTTTAGAAATTGTCGATC
AGCTTGTTCGCTCTGCTGCGGTTGATATTGTAGTTATTGACTCAGTAGCAGCACTGGTTCCCCGCGCTGAAATTGAAGGC
GACATGGGTGATGCCCATGTTGGTCTACAAGCGCGATTAATGAGCCAAGCTCTACGTAAAATTACGGGTAATATTGGTAA
ATCTGGTTGTACCGTAATTTTCATTAACCAGTTGCGGCAAAAAATCGGTGTTACTTACGGTAGCCCAGAAACTACTACTG
GTGGTAACGCATTGAAATTTTACGCTTCGGTGCGCTTGGATATTCGTCGGATTCAAACCTTGAAAAAAGGTACAGATGAA
TATGGTAATCGCGTTAAGGTCAAAGTCGCCAAAAATAAAGTAGCGCCGCCTTTTAGAATAGCGGAATTTGACATTATTTT
TGGTAAAGGTATTTCTACCTTGGGTTGTGTTGTTGACCTAGCAGAAGAAACTGGCATTATTATCCGCAAAGGAGCTTGGT
ATAGTTACAACGGCGATAATATCTCCCAAGGACGAGACAACGCCATTAAGTATCTAGAAGAAAAGCCTGAATTTGCTGAA
GAAATTAAGAAACTGGTGCGTGAAAAGTTAGATAAAGGCGCTGTTGTTTCTGCTAACTCCGTAGCTAAAGCCAGTGAAGA
AGATGAAGAGGAAGAAGTTGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.401

96.657

0.613
  recA Acinetobacter baumannii D1279779

62.931

96.936

0.61
  recA Pseudomonas stutzeri DSM 10701

64.118

94.708

0.607
  recA Neisseria gonorrhoeae MS11

60.907

98.329

0.599
  recA Neisseria gonorrhoeae strain FA1090

60.907

98.329

0.599
  recA Neisseria gonorrhoeae MS11

60.907

98.329

0.599
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.201

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Streptococcus pneumoniae R6

58.31

98.886

0.577
  recA Streptococcus pneumoniae Rx1

58.31

98.886

0.577
  recA Streptococcus pneumoniae D39

58.31

98.886

0.577
  recA Streptococcus pneumoniae TIGR4

58.31

98.886

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.028

98.886

0.574
  recA Glaesserella parasuis strain SC1401

59.195

96.936

0.574
  recA Streptococcus mutans UA159

58.79

96.657

0.568
  recA Streptococcus mitis NCTC 12261

57.465

98.886

0.568
  recA Helicobacter pylori 26695

61.446

92.479

0.568
  recA Helicobacter pylori strain NCTC11637

61.446

92.479

0.568
  recA Streptococcus pyogenes NZ131

57.79

98.329

0.568
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.551

96.1

0.563
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

91.365

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.752

89.972

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment