Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CVS54_RS10520 Genome accession   NZ_CP031422
Coordinates   2171041..2172090 (-) Length   349 a.a.
NCBI ID   WP_046748328.1    Uniprot ID   A0A0M3D897
Organism   Microbacterium oxydans strain HG3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2166041..2177090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVS54_RS10495 (CVS54_02123) dapF 2166159..2167031 (-) 873 WP_127012270.1 diaminopimelate epimerase -
  CVS54_RS10500 (CVS54_02124) - 2167067..2167603 (-) 537 WP_046748331.1 dihydrofolate reductase family protein -
  CVS54_RS10505 (CVS54_02125) miaA 2167655..2168566 (-) 912 WP_127012271.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  CVS54_RS10510 (CVS54_02126) miaB 2168563..2170110 (-) 1548 WP_046748472.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CVS54_RS19250 (CVS54_02127) - 2170160..2170633 (-) 474 WP_231589704.1 regulatory protein RecX -
  CVS54_RS10520 (CVS54_02128) recA 2171041..2172090 (-) 1050 WP_046748328.1 recombinase RecA Machinery gene
  CVS54_RS10525 - 2172358..2172582 (-) 225 WP_046748327.1 DUF3046 domain-containing protein -
  CVS54_RS10530 (CVS54_02129) - 2172601..2172909 (-) 309 WP_026049981.1 helix-turn-helix domain-containing protein -
  CVS54_RS10535 (CVS54_02130) - 2173051..2173536 (-) 486 WP_046748326.1 CinA family protein -
  CVS54_RS10540 (CVS54_02131) pgsA 2173533..2174108 (-) 576 WP_046748325.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CVS54_RS10545 (CVS54_02132) - 2174108..2176843 (-) 2736 WP_046748324.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37058.30 Da        Isoelectric Point: 5.5016

>NTDB_id=306636 CVS54_RS10520 WP_046748328.1 2171041..2172090(-) (recA) [Microbacterium oxydans strain HG3]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGGPSGAPAAADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=306636 CVS54_RS10520 WP_046748328.1 2171041..2172090(-) (recA) [Microbacterium oxydans strain HG3]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCTCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGTGCCCCTGTGGCCGTCATCCCGACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TGGGAGGACTGCCGCGTGGCCGAATCGTAGAGATCTACGGACCGGAGTCCTCGGGTAAGACGACTCTCACGCTGCACGCG
ATCGCCAACGCTCAGCGCGCCGGGGGAATCGCGGCGTTCATCGATGCCGAGCACGCGCTCGACCCCGACTATGCCGCGAA
GCTGGGCGTCGACATCGATGCTCTCCTGGTGTCGCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGG
TGCGCTCCGGAGCCATCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCTCGTGCCGAGATCGAGGGCGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCGCGACTCATGTCGCAGGCCCTTCGTAAGCTCACCGGTGGTCTGAACCAGACCAA
CACCACCATGATCTTCATCAACCAGCTGCGTGAGAAGATCGGCGTCTTCTTCGGTTCCCCCGAGACCACCGCCGGCGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACGCTGAAGGACGGAACCGATGCCGTCGGA
AACCGCACCAGGGTCAAGGTCGTGAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAAGGCAGCCTGATCGACTTCGGCGTCGAACACGCCATCGTGAAGAAGTCGGGTTCCTGGTACACCT
ATGACGGTGATCAGCTGGGTCAGGGCAAGGAGAACGCACGCACGTTCCTGCTCAACAACCCCGACATCGCTCTGGCTATC
GAGACGCAGATCAAGCAGAAGCTCGGTATCGGCGGGCCGTCCGGTGCCCCGGCAGCTGCCGATGAGCTCGCAGAGCGTCG
TCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M3D897

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.396

97.708

0.639
  recA Acinetobacter baylyi ADP1

65.294

97.421

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.378

93.983

0.633
  recA Acinetobacter baumannii D1279779

65.282

96.562

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

93.41

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.55

0.613
  recA Vibrio cholerae strain A1552

66.254

92.55

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae strain FA1090

65.644

93.41

0.613
  recA Streptococcus mitis NCTC 12261

60.405

99.14

0.599
  recA Streptococcus mitis SK321

60.116

99.14

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

93.983

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

93.123

0.587
  recA Glaesserella parasuis strain SC1401

62.769

93.123

0.585
  recA Helicobacter pylori strain NCTC11637

61.212

94.556

0.579
  recA Helicobacter pylori 26695

61.212

94.556

0.579
  recA Streptococcus pneumoniae Rx1

61.212

94.556

0.579
  recA Streptococcus pneumoniae D39

61.212

94.556

0.579
  recA Streptococcus pneumoniae R6

61.212

94.556

0.579
  recA Streptococcus pneumoniae TIGR4

61.212

94.556

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.269

0.573
  recA Streptococcus mutans UA159

60.486

94.269

0.57
  recA Lactococcus lactis subsp. cremoris KW2

60

94.556

0.567
  recA Streptococcus pyogenes NZ131

60.061

93.983

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.691

0.547

Multiple sequence alignment