Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DWG18_RS06540 Genome accession   NZ_CP031413
Coordinates   1395768..1396796 (-) Length   342 a.a.
NCBI ID   WP_115646452.1    Uniprot ID   -
Organism   Lysobacter sp. TY2-98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1390768..1401796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWG18_RS06525 (DWG18_06525) csrA 1391713..1391916 (-) 204 WP_115646448.1 carbon storage regulator CsrA -
  DWG18_RS06530 (DWG18_06530) alaS 1392033..1394678 (-) 2646 WP_115646450.1 alanine--tRNA ligase -
  DWG18_RS06535 (DWG18_06535) - 1394805..1395233 (-) 429 WP_115648073.1 regulatory protein RecX -
  DWG18_RS06540 (DWG18_06540) recA 1395768..1396796 (-) 1029 WP_115646452.1 recombinase RecA Machinery gene
  DWG18_RS06545 (DWG18_06545) - 1396951..1397142 (-) 192 WP_115646453.1 DUF1508 domain-containing protein -
  DWG18_RS06550 (DWG18_06550) lexA 1397151..1397774 (-) 624 WP_115646455.1 transcriptional repressor LexA -
  DWG18_RS06555 (DWG18_06555) - 1397820..1398317 (-) 498 WP_115646457.1 CinA family protein -
  DWG18_RS06560 (DWG18_06560) mutS 1398449..1401001 (+) 2553 WP_115646459.1 DNA mismatch repair protein MutS -
  DWG18_RS06565 (DWG18_06565) - 1401005..1401634 (-) 630 WP_115646461.1 TMEM175 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36746.43 Da        Isoelectric Point: 5.3604

>NTDB_id=306565 DWG18_RS06540 WP_115646452.1 1395768..1396796(-) (recA) [Lysobacter sp. TY2-98]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRAVEAVEIVGTGSLMLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSNAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVDAKLVEKSGAWYSCDGERIGQGKENARQFLKENPAMAAKL
EAALREKFVPQEINPAEAEADA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=306565 DWG18_RS06540 WP_115646452.1 1395768..1396796(-) (recA) [Lysobacter sp. TY2-98]
ATGGATGAGAACAAGAAGCGCGCGCTCGCAGCCGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGTGACCGTGCCGTTGAAGCGGTCGAGATCGTCGGCACGGGTTCCCTGATGCTCGACATCGCGCTTGGTATCGGCG
GTCTGCCGCGCGGTCGCGTGGTGGAAATTTACGGCCCGGAATCGTCGGGTAAGACCACGCTGACGCTGCAGGCGATCGCG
GAGTGCCAGAAGAAGGGCGGCACCGCAGCCTTCATCGACGCCGAGCATGCGCTCGATCCGATCTACGCCGCGAAACTCGG
CGTCAATGTCGATGACCTGCTGCTGTCGCAGCCCGACACCGGTGAGCAGGCGCTCGAAATCGCCGACATGCTGGTGCGTT
CGAATGCGGTCGACATGGTGGTCGTCGACTCGGTCGCCGCGCTTACGCCGAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGTCTGCAGGCTCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCGAACACGCT
GGTGATCTTCATCAACCAGCTGCGTATGAAGATCGGCATCATGATGCCGGGCCAGAGTCCCGAAACCACCACGGGCGGCA
ACGCCCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGTTCGATCAAGAAGGGCGACGAGATCATCGGT
AACCAGACGCGCATCAAGGTCGTCAAGAACAAGCTCGCGCCTCCGTTCAAGCAGGTCGTCACCGAAATCCTGTACGGCGA
AGGCATCTCGCGCGAGGGCGAGCTGATCGACATGGGCGTCGACGCCAAGCTCGTCGAGAAGTCGGGCGCGTGGTACAGCT
GCGACGGTGAGCGCATCGGGCAGGGCAAGGAGAATGCCCGTCAGTTCCTCAAGGAGAACCCGGCCATGGCAGCTAAGCTC
GAAGCGGCGCTCCGCGAGAAGTTCGTGCCGCAGGAGATCAACCCGGCCGAAGCCGAGGCGGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.182

100

0.722
  recA Ralstonia pseudosolanacearum GMI1000

76.038

91.52

0.696
  recA Vibrio cholerae strain A1552

71.386

97.076

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.386

97.076

0.693
  recA Acinetobacter baylyi ADP1

71.299

96.784

0.69
  recA Acinetobacter baumannii D1279779

70.238

98.246

0.69
  recA Neisseria gonorrhoeae MS11

69.632

95.322

0.664
  recA Neisseria gonorrhoeae MS11

69.632

95.322

0.664
  recA Neisseria gonorrhoeae strain FA1090

69.632

95.322

0.664
  recA Glaesserella parasuis strain SC1401

69.35

94.444

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.923

95.029

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64

95.029

0.608
  recA Helicobacter pylori 26695

61.607

98.246

0.605
  recA Helicobacter pylori strain NCTC11637

61.31

98.246

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

97.368

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

60.831

98.538

0.599
  recA Streptococcus mutans UA159

59.475

100

0.596
  recA Streptococcus pneumoniae R6

60.671

95.906

0.582
  recA Streptococcus pneumoniae Rx1

60.671

95.906

0.582
  recA Streptococcus pneumoniae D39

60.671

95.906

0.582
  recA Streptococcus pneumoniae TIGR4

60.671

95.906

0.582
  recA Streptococcus pyogenes NZ131

59.697

96.491

0.576
  recA Streptococcus mitis SK321

60.061

95.906

0.576
  recA Streptococcus mitis NCTC 12261

59.756

95.906

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.385

95.029

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.683

92.105

0.55

Multiple sequence alignment