Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DVR09_RS11465 Genome accession   NZ_CP031357
Coordinates   2349277..2350341 (-) Length   354 a.a.
NCBI ID   WP_115417042.1    Uniprot ID   A0A345YG12
Organism   Erythrobacter aureus strain YH-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2344277..2355341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVR09_RS11445 (DVR09_11445) - 2345335..2346165 (-) 831 WP_115417038.1 trans-aconitate 2-methyltransferase -
  DVR09_RS11450 (DVR09_11450) - 2346170..2347192 (-) 1023 WP_115417039.1 NAD-dependent epimerase/dehydratase family protein -
  DVR09_RS11455 (DVR09_11455) - 2347192..2348358 (-) 1167 WP_115417040.1 nucleotide sugar dehydrogenase -
  DVR09_RS11460 (DVR09_11460) - 2348454..2349080 (-) 627 WP_115417041.1 glutathione S-transferase family protein -
  DVR09_RS11465 (DVR09_11465) recA 2349277..2350341 (-) 1065 WP_115417042.1 recombinase RecA Machinery gene
  DVR09_RS11470 (DVR09_11470) - 2350490..2352964 (-) 2475 WP_234041418.1 response regulator -
  DVR09_RS11475 (DVR09_11475) - 2352961..2353569 (-) 609 WP_234041419.1 DUF2062 domain-containing protein -
  DVR09_RS11480 (DVR09_11480) smpB 2353697..2354179 (-) 483 WP_115417043.1 SsrA-binding protein SmpB -
  DVR09_RS11485 (DVR09_11485) dapA 2354220..2355101 (-) 882 WP_115417044.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38108.70 Da        Isoelectric Point: 5.2076

>NTDB_id=306272 DVR09_RS11465 WP_115417042.1 2349277..2350341(-) (recA) [Erythrobacter aureus strain YH-07]
MAASLKLVEDKKVDADRQKALDAALAQIDRAFGKGSAMKLGQKETMQVEAISTGSLGLDIALGVGGLPKGRVIEIYGPES
SGKTTLALHVLAEAQKAGGTVAFVDAEHALDPVYARKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAAL
VPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTG
QIKDRDEVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQGRENAKKFL
KENPEMCAKLEAAIRGRTDEVAEEMMTGPDADED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=306272 DVR09_RS11465 WP_115417042.1 2349277..2350341(-) (recA) [Erythrobacter aureus strain YH-07]
ATGGCGGCAAGTCTGAAGCTCGTAGAGGACAAGAAAGTGGACGCAGACCGCCAGAAGGCATTGGACGCCGCGCTCGCACA
GATCGATCGTGCGTTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGGAAACCATGCAGGTAGAGGCGATTTCCACCG
GGTCGCTCGGCCTGGATATCGCACTGGGCGTGGGCGGTCTGCCCAAAGGGCGCGTGATTGAAATTTATGGTCCGGAAAGC
TCGGGCAAGACCACGCTGGCGCTTCATGTGCTGGCCGAAGCGCAAAAGGCGGGCGGCACGGTCGCTTTCGTCGACGCCGA
GCATGCGCTCGATCCGGTCTATGCCCGGAAGCTGGGTGTCGATATCGACGAACTGATTGTGTCGCAGCCCGATACGGGCG
AACAGGCGCTGGAAATAACCGATACGCTGGTCCGCTCCAACGCGATCGATGTGCTGGTGGTAGATTCGGTTGCGGCTCTC
GTGCCGCGCGCCGAAATCGAAGGCGAGATGGGCGACAGTCATGTCGGCCTCCAGGCCCGCTTGATGTCGCAGTCGCTGCG
CAAGCTGACCGGCTCGATCAACCGTTCCAAGTGCATGGTGATTTTCATCAACCAGCTCCGCATGAAAATCGGCGTTATGT
ATGGCAATCCCGAAACAACCACCGGGGGCAACGCGCTCAAATTCTATGCCTCGGTTCGTCTGGACATCCGCCGCACTGGG
CAGATCAAGGATCGTGACGAGGTGATCGGCAATTCGACCCGCGTGAAAGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAA
GCAGGTCGAGTTCGACATCATGTATGGCGAGGGCATTTCGAAGATCGGCGAAATCCTCGACCTCGGCGTCAAGGCGGGCG
TGGTCGAGAAATCGGGCAGCTGGTTCAGCTATGACAGCGTCCGCATCGGCCAGGGGCGCGAAAACGCCAAGAAGTTCCTC
AAGGAAAACCCCGAGATGTGTGCCAAGTTGGAAGCCGCCATTCGCGGCCGCACCGACGAGGTCGCCGAAGAGATGATGAC
CGGCCCGGACGCGGACGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345YG12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.245

92.09

0.647
  recA Vibrio cholerae strain A1552

67.16

95.48

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.16

95.48

0.641
  recA Pseudomonas stutzeri DSM 10701

69.846

91.808

0.641
  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633
  recA Neisseria gonorrhoeae MS11

69.782

90.678

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.782

90.678

0.633
  recA Acinetobacter baylyi ADP1

64.912

96.61

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.178

92.09

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.743

96.61

0.616
  recA Ralstonia pseudosolanacearum GMI1000

70.455

87.006

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

90.678

0.613
  recA Acinetobacter baumannii D1279779

66.873

91.243

0.61
  recA Helicobacter pylori strain NCTC11637

62.832

95.763

0.602
  recA Helicobacter pylori 26695

62.537

95.763

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

62.13

95.48

0.593
  recA Streptococcus pneumoniae D39

61.224

96.893

0.593
  recA Streptococcus pneumoniae TIGR4

61.224

96.893

0.593
  recA Streptococcus pneumoniae R6

61.224

96.893

0.593
  recA Streptococcus pneumoniae Rx1

61.224

96.893

0.593
  recA Streptococcus pyogenes NZ131

60.704

96.328

0.585
  recA Streptococcus mitis SK321

62.614

92.938

0.582
  recA Streptococcus mitis NCTC 12261

62.31

92.938

0.579
  recA Streptococcus mutans UA159

60.117

96.328

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.243

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.878

92.938

0.556

Multiple sequence alignment