Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OTER_RS04465 Genome accession   NC_010571
Coordinates   1088667..1089737 (-) Length   356 a.a.
NCBI ID   WP_012373712.1    Uniprot ID   B1ZWP7
Organism   Opitutus terrae PB90-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1083667..1094737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTER_RS04445 (Oter_0882) trmB 1084096..1084674 (-) 579 WP_012373708.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  OTER_RS04450 (Oter_0883) mnmG 1084664..1086568 (-) 1905 WP_044891563.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  OTER_RS04455 (Oter_0884) mnmE 1086592..1087950 (-) 1359 WP_012373710.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  OTER_RS04460 (Oter_0885) pdxH 1088070..1088651 (+) 582 WP_012373711.1 pyridoxamine 5'-phosphate oxidase -
  OTER_RS04465 (Oter_0886) recA 1088667..1089737 (-) 1071 WP_012373712.1 recombinase RecA Machinery gene
  OTER_RS04470 (Oter_0887) - 1089937..1091871 (-) 1935 WP_012373713.1 hypothetical protein -
  OTER_RS04475 (Oter_0888) - 1091868..1092911 (-) 1044 WP_012373714.1 type II secretion system protein -
  OTER_RS24930 (Oter_0889) - 1092940..1093383 (-) 444 WP_012373715.1 type II secretion system protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37759.75 Da        Isoelectric Point: 9.0854

>NTDB_id=30546 OTER_RS04465 WP_012373712.1 1088667..1089737(-) (recA) [Opitutus terrae PB90-1]
MSKAAPAKPLPAAAAPARDKNLDLAVSAITKQFGEGSIMRLGGATRMKVETLSTGSLAIDLALGVGGLPKGRIVEIYGPE
SSGKTTFCLSVIAEAQRRGGLAAFIDVEHALDPKYARVVGVNLDDLLVSQPDSGEDALNIMETLIRSNSIDVIVLDSVAA
LITKAELDGQMGDLTMGSQARLMSQAMRRLTAVVSKTACVCIFTNQIREKIGVMFGNPETTSGGRALKFFSSVRIDIRRK
DQIKTPEGKVIGNRTKIKVVKNKVAPPFTECEFDIMYDEGISRSGSLLDLGLERKILEKKGAWIAYEGALIGQGRDAAKA
AIKEKPELAEKITQAILDRVTVTGGAVITGGDGATT

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=30546 OTER_RS04465 WP_012373712.1 1088667..1089737(-) (recA) [Opitutus terrae PB90-1]
ATGTCCAAAGCCGCACCCGCCAAGCCCCTCCCCGCCGCCGCCGCGCCCGCGCGCGACAAGAATCTCGACCTCGCCGTTTC
CGCCATCACCAAGCAATTCGGCGAGGGCTCCATCATGCGGCTGGGCGGCGCCACCCGCATGAAGGTGGAGACGCTCTCCA
CGGGCTCGCTCGCGATCGATCTGGCCCTCGGGGTGGGCGGCCTGCCGAAGGGTCGCATTGTCGAAATCTACGGCCCCGAG
TCTTCCGGCAAAACGACGTTCTGCTTGAGCGTGATCGCCGAGGCACAGCGCCGCGGCGGGCTCGCCGCCTTCATCGATGT
GGAGCACGCGCTCGACCCGAAATACGCCCGGGTCGTCGGGGTGAATCTCGACGACCTGCTTGTCTCCCAGCCCGACAGCG
GCGAAGACGCGCTGAACATCATGGAGACGTTGATCCGCTCGAACAGCATCGACGTGATCGTGCTGGACTCGGTTGCCGCC
CTCATCACCAAGGCAGAACTCGACGGCCAGATGGGCGACCTCACGATGGGCAGCCAGGCGCGGCTGATGTCACAAGCCAT
GCGTCGTCTAACGGCCGTGGTGAGCAAGACCGCATGCGTGTGCATTTTTACCAACCAGATCCGCGAGAAGATCGGCGTGA
TGTTCGGCAATCCGGAGACGACCTCCGGCGGCCGTGCGCTGAAATTCTTCTCCTCGGTACGCATCGACATCCGCCGCAAG
GACCAGATCAAGACTCCGGAAGGCAAGGTCATCGGCAACCGGACCAAGATCAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCACCGAGTGCGAATTCGACATCATGTATGACGAGGGTATCTCGCGCTCCGGTTCGCTCCTCGATCTCGGCCTGGAGC
GCAAGATTCTGGAGAAGAAGGGGGCGTGGATCGCCTACGAGGGGGCGCTGATCGGCCAGGGCCGCGATGCCGCCAAGGCC
GCGATCAAGGAAAAGCCCGAACTCGCCGAGAAGATTACTCAGGCCATCCTCGATCGCGTGACGGTCACCGGCGGTGCCGT
CATCACAGGCGGCGACGGCGCCACGACCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1ZWP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.502

89.607

0.542
  recA Vibrio cholerae strain A1552

60.502

89.607

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.958

93.539

0.542
  recA Glaesserella parasuis strain SC1401

59.021

91.854

0.542
  recA Ralstonia pseudosolanacearum GMI1000

59.19

90.169

0.534
  recA Bacillus subtilis subsp. subtilis str. 168

56.798

92.978

0.528
  recA Pseudomonas stutzeri DSM 10701

57.669

91.573

0.528
  recA Streptococcus pneumoniae Rx1

55.621

94.944

0.528
  recA Streptococcus pneumoniae D39

55.621

94.944

0.528
  recA Streptococcus pneumoniae R6

55.621

94.944

0.528
  recA Streptococcus pneumoniae TIGR4

55.621

94.944

0.528
  recA Streptococcus mutans UA159

58.075

90.449

0.525
  recA Acinetobacter baumannii D1279779

56.325

93.258

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.706

95.506

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.055

91.573

0.522
  recA Helicobacter pylori strain NCTC11637

57.407

91.011

0.522
  recA Helicobacter pylori 26695

57.407

91.011

0.522
  recA Lactococcus lactis subsp. cremoris KW2

56.832

90.449

0.514
  recA Streptococcus pyogenes NZ131

56.832

90.449

0.514
  recA Streptococcus mitis NCTC 12261

56.832

90.449

0.514
  recA Streptococcus mitis SK321

56.832

90.449

0.514
  recA Acinetobacter baylyi ADP1

56.656

90.73

0.514
  recA Neisseria gonorrhoeae MS11

58.576

86.798

0.508
  recA Neisseria gonorrhoeae strain FA1090

58.576

86.798

0.508
  recA Neisseria gonorrhoeae MS11

58.576

86.798

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

55.799

89.607

0.5

Multiple sequence alignment