Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DWB94_RS07100 Genome accession   NZ_CP031277
Coordinates   1426620..1427666 (-) Length   348 a.a.
NCBI ID   WP_145423819.1    Uniprot ID   -
Organism   Staphylococcus hominis strain 19A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1421620..1432666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB94_RS07080 (DWB94_07080) - 1421674..1423434 (-) 1761 WP_145423825.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  DWB94_RS07085 (DWB94_07085) - 1423544..1424338 (-) 795 WP_145423823.1 TIGR00282 family metallophosphoesterase -
  DWB94_RS07090 (DWB94_07090) - 1424492..1424707 (+) 216 WP_002448781.1 hypothetical protein -
  DWB94_RS07095 (DWB94_07095) rny 1424782..1426341 (-) 1560 WP_145423821.1 ribonuclease Y -
  DWB94_RS07100 (DWB94_07100) recA 1426620..1427666 (-) 1047 WP_145423819.1 recombinase RecA Machinery gene
  DWB94_RS07105 (DWB94_07105) - 1427843..1428982 (-) 1140 WP_145423817.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DWB94_RS07110 (DWB94_07110) pgsA 1429116..1429691 (-) 576 WP_017174623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DWB94_RS07115 (DWB94_07115) - 1429724..1430116 (-) 393 WP_145423815.1 RodZ family helix-turn-helix domain-containing protein -
  DWB94_RS07120 (DWB94_07120) - 1430137..1430979 (-) 843 WP_145423813.1 DUF3388 domain-containing protein -
  DWB94_RS07125 (DWB94_07125) ymfI 1431098..1431802 (-) 705 WP_019835106.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37803.69 Da        Isoelectric Point: 5.0030

>NTDB_id=305394 DWB94_RS07100 WP_145423819.1 1426620..1427666(-) (recA) [Staphylococcus hominis strain 19A]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDR
KLREKLGIFDGDVEESEDKSSQTLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=305394 DWB94_RS07100 WP_145423819.1 1426620..1427666(-) (recA) [Staphylococcus hominis strain 19A]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCCTTTGGTAAGGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGTCGTGTGTCTAGTGTATCAAGTGGTTCAGTTACTTTAGATAATGCACTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGTCCTGAAAGTTCCGGTAAAACAACAGTAGCACTCCATGCTATTGCT
GAAGTGCAAAAAAATGGAGGCGTTGCTGCGTTTATCGACGCTGAACATGCACTTGATCCAGTATATGCTGAAGCATTAGG
TGTTGATATAGATAATTTATATCTTTCTCAACCCGACCATGGTGAACAAGGTTTAGAAATAGCAGAAGCTTTCGTAAGAA
GTGGAGCAGTTGACATTGTTGTTGTAGACTCAGTTGCTGCTTTGACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTCTTCAAGCACGTTTAATGTCTCAGGCTTTACGTAAACTTTCAGGTGCAATTTCAAAATCAAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAAGTTGGAGTAATGTTTGGTAACCCAGAAACTACACCTGGTGGTAGAGCAT
TAAAATTCTATAGCTCAGTACGTTTAGAAGTACGTCGTGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACTAAAATTAAAGTTGTTAAAAATAAAGTAGCACCACCATTTAGAATTGCTGAAGTAGATATCATGTATGGTCAAGGTAT
TTCAAAAGAGGGCGAATTAATTGACTTAGGTGTAGAAAATGACATTGTCGATAAATCTGGTGCTTGGTACTCATATAATG
GTGAGAGAATGGGTCAAGGTAAAGAAAATGTTAAAACATATCTTAAAGAAAACCCTCAAATTAAAGATGAAATCGATCGC
AAATTACGTGAAAAATTAGGCATTTTCGATGGTGATGTTGAAGAAAGTGAAGATAAATCATCACAAACATTATTCGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.914

93.678

0.73
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

100

0.693
  recA Streptococcus pneumoniae Rx1

65.517

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.655
  recA Streptococcus pneumoniae R6

65.517

100

0.655
  recA Streptococcus pneumoniae D39

65.517

100

0.655
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mutans UA159

64.857

100

0.652
  recA Streptococcus mitis NCTC 12261

65.318

99.425

0.649
  recA Streptococcus mitis SK321

65.116

98.851

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.487

97.414

0.638
  recA Neisseria gonorrhoeae strain FA1090

64.809

97.989

0.635
  recA Neisseria gonorrhoeae MS11

64.809

97.989

0.635
  recA Neisseria gonorrhoeae MS11

64.809

97.989

0.635
  recA Acinetobacter baylyi ADP1

64.035

98.276

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Acinetobacter baumannii D1279779

66.564

93.678

0.624
  recA Helicobacter pylori 26695

65.854

94.253

0.621
  recA Helicobacter pylori strain NCTC11637

65.549

94.253

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.678

0.609
  recA Vibrio cholerae strain A1552

65.031

93.678

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Glaesserella parasuis strain SC1401

58.739

100

0.589
  recA Pseudomonas stutzeri DSM 10701

62.27

93.678

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.115

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.025

90.805

0.563

Multiple sequence alignment