Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DWB96_RS07940 | Genome accession | NZ_CP031271 |
| Coordinates | 1668279..1669331 (-) | Length | 350 a.a. |
| NCBI ID | WP_037541417.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain 26D | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1669994..1748255 | 1668279..1669331 | flank | 663 |
Gene organization within MGE regions
Location: 1668279..1748255
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWB96_RS07940 (DWB96_07960) | recA | 1668279..1669331 (-) | 1053 | WP_037541417.1 | recombinase RecA | Machinery gene |
| DWB96_RS07945 (DWB96_07965) | - | 1669496..1670647 (-) | 1152 | WP_002442605.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| DWB96_RS07950 (DWB96_07970) | pgsA | 1670833..1671414 (-) | 582 | WP_002442602.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DWB96_RS07955 (DWB96_07975) | - | 1671446..1671838 (-) | 393 | WP_002442599.1 | helix-turn-helix domain-containing protein | - |
| DWB96_RS07960 (DWB96_07980) | - | 1671857..1672684 (-) | 828 | WP_002442598.1 | YmfK family protein | - |
| DWB96_RS07965 (DWB96_07985) | ymfI | 1672869..1673573 (-) | 705 | WP_002442596.1 | elongation factor P 5-aminopentanone reductase | - |
| DWB96_RS07970 (DWB96_07990) | yfmH | 1673573..1674859 (-) | 1287 | WP_002442594.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| DWB96_RS07975 (DWB96_07995) | yfmF | 1674859..1676124 (-) | 1266 | WP_037541551.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| DWB96_RS07980 (DWB96_08000) | - | 1676171..1676881 (-) | 711 | WP_002442591.1 | GntR family transcriptional regulator | - |
| DWB96_RS13585 | - | 1676884..1678335 (-) | 1452 | Protein_1547 | DNA translocase FtsK | - |
| DWB96_RS13590 | - | 1678387..1679295 (-) | 909 | Protein_1548 | cell division protein FtsK | - |
| DWB96_RS07990 (DWB96_08010) | rnjB | 1679559..1681232 (-) | 1674 | WP_037541414.1 | ribonuclease J2 | - |
| DWB96_RS07995 (DWB96_08020) | pnp | 1681473..1683572 (-) | 2100 | WP_049402112.1 | polyribonucleotide nucleotidyltransferase | - |
| DWB96_RS08000 (DWB96_08025) | rpsO | 1683889..1684158 (-) | 270 | WP_002442583.1 | 30S ribosomal protein S15 | - |
| DWB96_RS08005 (DWB96_08030) | ribF | 1684419..1685390 (-) | 972 | WP_002442581.1 | riboflavin biosynthesis protein RibF | - |
| DWB96_RS08010 (DWB96_08035) | truB | 1685406..1686323 (-) | 918 | WP_002442577.1 | tRNA pseudouridine(55) synthase TruB | - |
| DWB96_RS08015 (DWB96_08040) | rbfA | 1686471..1686821 (-) | 351 | WP_037541413.1 | 30S ribosome-binding factor RbfA | - |
| DWB96_RS08020 (DWB96_08045) | infB | 1686983..1689148 (-) | 2166 | WP_044466282.1 | translation initiation factor IF-2 | - |
| DWB96_RS08025 (DWB96_08050) | - | 1689153..1689470 (-) | 318 | WP_002442572.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| DWB96_RS08030 (DWB96_08055) | rnpM | 1689467..1689751 (-) | 285 | WP_002442571.1 | RNase P modulator RnpM | - |
| DWB96_RS08035 (DWB96_08060) | nusA | 1689768..1690979 (-) | 1212 | WP_002442570.1 | transcription termination factor NusA | - |
| DWB96_RS08040 (DWB96_08065) | rimP | 1691000..1691467 (-) | 468 | WP_037541410.1 | ribosome maturation factor RimP | - |
| DWB96_RS08045 (DWB96_08070) | - | 1691649..1695959 (-) | 4311 | WP_095323372.1 | PolC-type DNA polymerase III | - |
| DWB96_RS08050 (DWB96_08075) | - | 1696212..1697915 (-) | 1704 | WP_002442566.1 | proline--tRNA ligase | - |
| DWB96_RS08055 (DWB96_08080) | rseP | 1697935..1699221 (-) | 1287 | WP_002442564.1 | RIP metalloprotease RseP | - |
| DWB96_RS08060 (DWB96_08085) | - | 1699462..1700244 (-) | 783 | WP_002442562.1 | phosphatidate cytidylyltransferase | - |
| DWB96_RS08065 (DWB96_08090) | - | 1700248..1701018 (-) | 771 | WP_037541408.1 | isoprenyl transferase | - |
| DWB96_RS08070 (DWB96_08095) | frr | 1701302..1701856 (-) | 555 | WP_002442559.1 | ribosome recycling factor | - |
| DWB96_RS08075 (DWB96_08100) | pyrH | 1701873..1702595 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| DWB96_RS08080 (DWB96_08105) | tsf | 1702733..1703611 (-) | 879 | WP_002442557.1 | translation elongation factor Ts | - |
| DWB96_RS08085 (DWB96_08110) | rpsB | 1703765..1704553 (-) | 789 | WP_002442555.1 | 30S ribosomal protein S2 | - |
| DWB96_RS08090 (DWB96_08115) | codY | 1704805..1705578 (-) | 774 | WP_037541406.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| DWB96_RS08095 (DWB96_08120) | hslU | 1705601..1707004 (-) | 1404 | WP_002442550.1 | ATP-dependent protease ATPase subunit HslU | - |
| DWB96_RS08100 (DWB96_08125) | hslV | 1707089..1707631 (-) | 543 | WP_002442548.1 | ATP-dependent protease subunit HslV | - |
| DWB96_RS08105 (DWB96_08130) | xerC | 1707635..1708525 (-) | 891 | WP_037541405.1 | tyrosine recombinase XerC | - |
| DWB96_RS08110 (DWB96_08135) | trmFO | 1708759..1710066 (-) | 1308 | WP_037541403.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| DWB96_RS08115 (DWB96_08140) | topA | 1710093..1712168 (-) | 2076 | WP_167495587.1 | type I DNA topoisomerase | - |
| DWB96_RS08120 (DWB96_08145) | dprA | 1712346..1713218 (-) | 873 | WP_037541402.1 | DNA-processing protein DprA | Machinery gene |
| DWB96_RS08125 (DWB96_08150) | sucD | 1713482..1714390 (-) | 909 | WP_002442537.1 | succinate--CoA ligase subunit alpha | - |
| DWB96_RS08130 (DWB96_08155) | sucC | 1714412..1715578 (-) | 1167 | WP_002442536.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| DWB96_RS08135 (DWB96_08160) | - | 1715686..1716456 (-) | 771 | WP_002442534.1 | ribonuclease HII | - |
| DWB96_RS08140 (DWB96_08165) | ylqF | 1716440..1717324 (-) | 885 | WP_037541400.1 | ribosome biogenesis GTPase YlqF | - |
| DWB96_RS08145 (DWB96_08170) | - | 1717601..1720201 (+) | 2601 | WP_002442530.1 | YfhO family protein | - |
| DWB96_RS08150 (DWB96_08175) | - | 1720194..1722803 (+) | 2610 | WP_002442528.1 | YfhO family protein | - |
| DWB96_RS08155 (DWB96_08180) | rplS | 1722989..1723339 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| DWB96_RS08160 (DWB96_08185) | trmD | 1723444..1724181 (-) | 738 | WP_002442526.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DWB96_RS08165 (DWB96_08190) | rimM | 1724181..1724684 (-) | 504 | WP_002442524.1 | ribosome maturation factor RimM | - |
| DWB96_RS08170 (DWB96_08195) | rpsP | 1724808..1725083 (-) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| DWB96_RS08175 (DWB96_08200) | ffh | 1725299..1726666 (-) | 1368 | WP_002442522.1 | signal recognition particle protein | - |
| DWB96_RS08180 (DWB96_08205) | - | 1726698..1727030 (-) | 333 | WP_002442519.1 | putative DNA-binding protein | - |
| DWB96_RS08185 (DWB96_08210) | ftsY | 1727017..1728273 (-) | 1257 | WP_002442517.1 | signal recognition particle-docking protein FtsY | - |
| DWB96_RS08190 (DWB96_08215) | smc | 1728270..1731839 (-) | 3570 | WP_044466284.1 | chromosome segregation protein SMC | - |
| DWB96_RS08195 (DWB96_08220) | rnc | 1731938..1732684 (-) | 747 | WP_002442511.1 | ribonuclease III | - |
| DWB96_RS08200 (DWB96_08225) | - | 1732804..1733037 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| DWB96_RS08205 (DWB96_08230) | fabG | 1733347..1734081 (-) | 735 | WP_037541397.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| DWB96_RS08210 (DWB96_08235) | fabD | 1734074..1735000 (-) | 927 | WP_037541396.1 | ACP S-malonyltransferase | - |
| DWB96_RS08215 (DWB96_08240) | plsX | 1734993..1735979 (-) | 987 | WP_037541395.1 | phosphate acyltransferase PlsX | - |
| DWB96_RS08220 (DWB96_08245) | fapR | 1735972..1736541 (-) | 570 | WP_044466285.1 | transcription factor FapR | - |
| DWB96_RS08225 (DWB96_08250) | recG | 1736884..1738932 (-) | 2049 | WP_002442500.1 | ATP-dependent DNA helicase RecG | - |
| DWB96_RS13465 | - | 1739155..1739424 (-) | 270 | WP_240700736.1 | excalibur calcium-binding domain-containing protein | - |
| DWB96_RS08230 (DWB96_08255) | - | 1739404..1740009 (-) | 606 | Protein_1598 | thermonuclease family protein | - |
| DWB96_RS08235 (DWB96_08260) | - | 1740287..1741354 (-) | 1068 | WP_037541391.1 | Leu/Phe/Val dehydrogenase | - |
| DWB96_RS08240 (DWB96_08265) | fakA | 1741591..1743249 (-) | 1659 | WP_002442495.1 | fatty acid kinase catalytic subunit FakA | - |
| DWB96_RS08245 (DWB96_08270) | - | 1743264..1743638 (-) | 375 | WP_037541388.1 | Asp23/Gls24 family envelope stress response protein | - |
| DWB96_RS08250 (DWB96_08275) | rpmB | 1744017..1744205 (+) | 189 | WP_002435210.1 | 50S ribosomal protein L28 | - |
| DWB96_RS08255 (DWB96_08280) | - | 1744477..1745112 (-) | 636 | WP_002442491.1 | thiamine diphosphokinase | - |
| DWB96_RS08260 (DWB96_08285) | rpe | 1745117..1745761 (-) | 645 | WP_002442490.1 | ribulose-phosphate 3-epimerase | - |
| DWB96_RS08265 (DWB96_08290) | rsgA | 1745762..1746637 (-) | 876 | WP_002442489.1 | ribosome small subunit-dependent GTPase A | - |
| DWB96_RS08270 (DWB96_08295) | - | 1746813..1748000 (+) | 1188 | WP_002442488.1 | CynX/NimT family MFS transporter | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38072.95 Da Isoelectric Point: 4.9352
>NTDB_id=305299 DWB96_RS07940 WP_037541417.1 1668279..1669331(-) (recA) [Staphylococcus caprae strain 26D]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=305299 DWB96_RS07940 WP_037541417.1 1668279..1669331(-) (recA) [Staphylococcus caprae strain 26D]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.