Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DV119_RS01275 Genome accession   NZ_CP031245
Coordinates   208332..209498 (-) Length   388 a.a.
NCBI ID   WP_054387479.1    Uniprot ID   A0AA44S6K3
Organism   Streptococcus pneumoniae strain M16808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203332..214498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS01240 - 203640..204065 (-) 426 WP_000204065.1 hypothetical protein -
  DV119_RS01245 - 204194..204553 (-) 360 WP_000749822.1 ImmA/IrrE family metallo-endopeptidase -
  DV119_RS01250 - 204599..204805 (-) 207 WP_000366091.1 hypothetical protein -
  DV119_RS01255 - 204792..204965 (-) 174 WP_000289349.1 helix-turn-helix domain-containing protein -
  DV119_RS01260 lytA 205324..206280 (-) 957 WP_000405235.1 N-acetylmuramoyl-L-alanine amidase LytA -
  DV119_RS01265 - 206656..208026 (-) 1371 WP_050221171.1 MATE family efflux transporter -
  DV119_RS01275 recA 208332..209498 (-) 1167 WP_054387479.1 recombinase RecA Machinery gene
  DV119_RS01280 cinA 209553..210809 (-) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  DV119_RS01285 brpA 210893..211909 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  DV119_RS01290 - 211917..212435 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  DV119_RS01295 tsaE 212425..212868 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV119_RS01300 comM 212954..213574 (-) 621 WP_050203505.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41880.76 Da        Isoelectric Point: 5.0169

>NTDB_id=304599 DV119_RS01275 WP_054387479.1 208332..209498(-) (recA) [Streptococcus pneumoniae strain M16808]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEGAVNEKVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=304599 DV119_RS01275 WP_054387479.1 208332..209498(-) (recA) [Streptococcus pneumoniae strain M16808]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGGAGCAGTGAATGAAAAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.227

100

0.992
  recA Streptococcus pneumoniae D39

99.227

100

0.992
  recA Streptococcus pneumoniae R6

99.227

100

0.992
  recA Streptococcus pneumoniae TIGR4

99.227

100

0.992
  recA Streptococcus mitis NCTC 12261

94.072

100

0.941
  recA Streptococcus mitis SK321

93.557

100

0.936
  recA Streptococcus mutans UA159

82.597

99.227

0.82
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Glaesserella parasuis strain SC1401

60.641

88.402

0.536
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment