Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCHO_RS02510 Genome accession   NC_010524
Coordinates   538139..539200 (-) Length   353 a.a.
NCBI ID   WP_012345534.1    Uniprot ID   B1XY03
Organism   Leptothrix cholodnii SP-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533139..544200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCHO_RS02485 (Lcho_0492) - 533233..534894 (+) 1662 WP_012345529.1 M48 family metalloprotease -
  LCHO_RS02490 (Lcho_0493) - 534928..535284 (-) 357 WP_150105402.1 phage holin family protein -
  LCHO_RS02495 (Lcho_0494) sucD 535400..536293 (-) 894 WP_012345531.1 succinate--CoA ligase subunit alpha -
  LCHO_RS02500 (Lcho_0495) sucC 536311..537471 (-) 1161 WP_012345532.1 ADP-forming succinate--CoA ligase subunit beta -
  LCHO_RS02505 (Lcho_0496) recX 537626..538099 (-) 474 WP_012345533.1 recombination regulator RecX -
  LCHO_RS02510 (Lcho_0497) recA 538139..539200 (-) 1062 WP_012345534.1 recombinase RecA Machinery gene
  LCHO_RS02515 (Lcho_0498) - 539365..540036 (+) 672 WP_012345535.1 response regulator -
  LCHO_RS02520 (Lcho_0499) - 540148..541635 (+) 1488 WP_150105554.1 sensor histidine kinase -
  LCHO_RS02525 (Lcho_0500) rodA 541651..542805 (-) 1155 WP_012345537.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37579.36 Da        Isoelectric Point: 5.5751

>NTDB_id=30433 LCHO_RS02510 WP_012345534.1 538139..539200(-) (recA) [Leptothrix cholodnii SP-6]
MEATAKSALSGEKAKALQVALAQIEKQFGKGSIMRLGEGEVIEDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAQMQKLSGVCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDALVRSGSVDLIVVDSVAALTPK
AELEGEMGDSLPGLQARLMSQALRKLTSNIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK
KGEEVIGSETKVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVVAKVVDKSGAWYAYNGEKIGQGKDNCREFLREN
PALAHEIENKIRESLGISLLPPQNGAAAAAPAA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=30433 LCHO_RS02510 WP_012345534.1 538139..539200(-) (recA) [Leptothrix cholodnii SP-6]
ATGGAAGCAACCGCCAAGTCGGCGCTGAGCGGCGAAAAAGCCAAGGCCTTGCAGGTCGCACTGGCCCAGATCGAAAAGCA
GTTCGGCAAGGGATCGATCATGCGCCTGGGCGAAGGCGAGGTGATCGAGGACATCCAGGTGGTCTCGACCGGCTCGCTCG
GCCTCGACGTCGCCCTCGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCCGAGTCGTCGGGCAAG
ACCACGCTGACGCTGCAGGTCATCGCCCAGATGCAGAAGCTCTCGGGCGTCTGCGCCTTCATCGACGCCGAACACGCGCT
CGACATCCAGTACGCGCAAAAGCTCGGCGTCAACCTGCAGGACCTGCTGATCAGCCAGCCCGACACCGGCGAGCAGGCGC
TCGAGATCGTCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTGGTCGACTCGGTCGCGGCCCTGACGCCCAAG
GCCGAACTCGAAGGCGAGATGGGCGATTCGCTGCCCGGCCTGCAGGCTCGCCTGATGAGCCAGGCCCTGCGCAAGCTGAC
CTCGAACATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CCGAAACCACCACCGGCGGCAACGCACTCAAGTTCTACGCCTCGGTGCGACTCGACATCCGCCGCATCGGCAGCATCAAG
AAGGGCGAAGAAGTCATCGGCAGCGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCACCGTTCAAGACCGCCGA
GTTCGACATCCTCTACGGTGAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGGTCGCCAAGGTGGTCGACA
AGTCCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACTGCCGCGAGTTCCTGCGCGAGAAC
CCGGCGCTGGCGCACGAGATCGAGAACAAGATCCGCGAATCGCTCGGCATCAGCCTGCTGCCACCGCAGAACGGTGCTGC
TGCAGCCGCACCCGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1XY03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.891

96.034

0.796
  recA Neisseria gonorrhoeae MS11

71.903

93.768

0.674
  recA Neisseria gonorrhoeae MS11

71.903

93.768

0.674
  recA Neisseria gonorrhoeae strain FA1090

71.903

93.768

0.674
  recA Acinetobacter baumannii D1279779

70.958

94.618

0.671
  recA Acinetobacter baylyi ADP1

71.865

92.635

0.666
  recA Pseudomonas stutzeri DSM 10701

72.446

91.501

0.663
  recA Glaesserella parasuis strain SC1401

72.222

91.785

0.663
  recA Vibrio cholerae strain A1552

70.181

94.051

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.181

94.051

0.66
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.706

96.317

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.061

93.484

0.618
  recA Helicobacter pylori 26695

65.455

93.484

0.612
  recA Helicobacter pylori strain NCTC11637

65.152

93.484

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

92.351

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

60.36

94.334

0.569
  recA Streptococcus mutans UA159

60.303

93.484

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.697

93.484

0.558
  recA Streptococcus pyogenes NZ131

59.878

93.201

0.558
  recA Streptococcus pneumoniae R6

58.859

94.334

0.555
  recA Streptococcus pneumoniae Rx1

58.859

94.334

0.555
  recA Streptococcus pneumoniae D39

58.859

94.334

0.555
  recA Streptococcus pneumoniae TIGR4

58.859

94.334

0.555
  recA Streptococcus mitis SK321

58.559

94.334

0.552
  recA Streptococcus mitis NCTC 12261

58.559

94.334

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.935

0.547

Multiple sequence alignment