Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DTO96_RS10150 Genome accession   NZ_CP031124
Coordinates   2256132..2257268 (+) Length   378 a.a.
NCBI ID   WP_114563391.1    Uniprot ID   A0A345DD62
Organism   Ephemeroptericola cinctiostellae strain F02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251132..2262268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO96_RS10135 (DTO96_102043) - 2252809..2254065 (+) 1257 WP_192878983.1 hypothetical protein -
  DTO96_RS10140 (DTO96_102044) - 2254174..2255187 (+) 1014 WP_114563389.1 class 1 fructose-bisphosphatase -
  DTO96_RS10145 (DTO96_102045) - 2255331..2256008 (+) 678 WP_114563390.1 glycosyltransferase -
  DTO96_RS10150 (DTO96_102046) recA 2256132..2257268 (+) 1137 WP_114563391.1 recombinase RecA Machinery gene
  DTO96_RS10155 (DTO96_102047) recX 2257363..2258001 (+) 639 WP_114563392.1 recombination regulator RecX -
  DTO96_RS10160 (DTO96_102048) - 2258199..2259044 (-) 846 WP_157964406.1 peptidylprolyl isomerase -
  DTO96_RS10165 (DTO96_102049) - 2259308..2259577 (-) 270 WP_373277789.1 BolA family protein -
  DTO96_RS10170 (DTO96_102050) - 2259574..2260113 (-) 540 WP_114563394.1 septation protein A -
  DTO96_RS10175 (DTO96_102051) msrB 2260243..2260647 (-) 405 WP_114563395.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 39968.83 Da        Isoelectric Point: 5.6144

>NTDB_id=303495 DTO96_RS10150 WP_114563391.1 2256132..2257268(+) (recA) [Ephemeroptericola cinctiostellae strain F02]
MATRPDSKPAVNQAGNAEDKAKALAAALAQIEKQFGKGSIMRLGDNNEQPDISVVSTGSLGLDVALGVGGLPRGRVIEIY
GPESSGKTTLTLHVVAEMQKLGGTCAFVDAEHALDVSYAQKLGVNLTDLLISQPDTGEQALEMVDALVRSGAVDLIIVDS
VAALVPKAEIEGDMGASLPGLQARLMSQALRKLTASISRSQCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDI
RRIGGIKKGEEVLGNETRVKIVKNKVAPPFKEAIFDILYGEGISREGEVIDMGVAAGIVDKAGAWYSYGKDRIGQGKDNA
REYLRDNPAVAVEIENLVRDKLGVKARAILSEPKGASKAEKTAKAPKEVEAAAEDDAI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=303495 DTO96_RS10150 WP_114563391.1 2256132..2257268(+) (recA) [Ephemeroptericola cinctiostellae strain F02]
ATGGCCACAAGACCCGACTCAAAACCCGCTGTCAACCAAGCAGGTAATGCAGAAGATAAAGCCAAAGCTTTGGCCGCTGC
ACTTGCACAAATTGAAAAACAATTCGGCAAAGGCTCAATCATGCGCTTGGGCGACAACAATGAGCAACCTGACATTTCAG
TGGTCTCCACAGGCTCTTTGGGATTGGACGTTGCATTGGGTGTTGGCGGTTTGCCACGCGGCCGTGTGATTGAAATTTAC
GGCCCAGAATCATCAGGCAAAACCACATTGACCTTACACGTCGTGGCTGAAATGCAGAAACTCGGTGGCACATGCGCCTT
CGTCGATGCAGAGCATGCATTGGATGTCAGCTATGCCCAAAAGCTTGGTGTGAACTTGACCGACCTACTGATTTCTCAAC
CCGACACAGGCGAACAGGCCCTTGAAATGGTTGACGCATTGGTGCGTTCAGGTGCAGTTGACCTCATCATCGTCGACTCG
GTGGCTGCCCTCGTACCCAAAGCTGAGATTGAAGGCGACATGGGGGCATCTTTACCAGGCTTGCAAGCACGCCTGATGAG
TCAAGCATTGCGTAAACTCACGGCTTCCATCAGCCGCAGCCAATGCACTGTGATTTTCATTAACCAAATCCGTATGAAAA
TCGGTGTGATGTTTGGCTCTCCCGAAACCACAACGGGCGGTAACGCCCTCAAATTTTATGCTTCTGTTCGCCTTGACATC
CGCCGCATTGGCGGCATCAAAAAAGGTGAAGAAGTACTGGGCAACGAAACCCGCGTGAAAATTGTCAAAAACAAAGTTGC
GCCCCCCTTCAAAGAAGCCATTTTTGACATCCTTTACGGTGAAGGCATCTCGCGCGAAGGTGAGGTCATTGACATGGGTG
TGGCCGCAGGCATCGTTGATAAAGCAGGGGCATGGTACAGCTACGGCAAAGACCGCATCGGCCAAGGCAAAGACAATGCG
CGTGAATATTTACGTGACAACCCCGCCGTCGCGGTGGAAATCGAAAACTTGGTCCGGGATAAACTGGGTGTGAAAGCCCG
TGCCATTCTGAGTGAACCCAAAGGCGCCAGTAAAGCAGAAAAAACCGCAAAAGCGCCTAAAGAAGTTGAAGCCGCTGCTG
AAGATGATGCGATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345DD62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.892

83.069

0.672
  recA Pseudomonas stutzeri DSM 10701

70.238

88.889

0.624
  recA Glaesserella parasuis strain SC1401

66.289

93.386

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.73

94.18

0.619
  recA Vibrio cholerae strain A1552

65.73

94.18

0.619
  recA Neisseria gonorrhoeae MS11

70.517

87.037

0.614
  recA Neisseria gonorrhoeae MS11

70.517

87.037

0.614
  recA Neisseria gonorrhoeae strain FA1090

70.517

87.037

0.614
  recA Acinetobacter baumannii D1279779

70.154

85.979

0.603
  recA Acinetobacter baylyi ADP1

69.301

87.037

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.565

88.095

0.569
  recA Streptococcus pneumoniae D39

56.728

100

0.569
  recA Streptococcus pneumoniae TIGR4

56.728

100

0.569
  recA Streptococcus pneumoniae Rx1

56.728

100

0.569
  recA Streptococcus pneumoniae R6

56.728

100

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

87.037

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

87.831

0.553
  recA Streptococcus mitis SK321

59.77

92.063

0.55
  recA Streptococcus mitis NCTC 12261

59.483

92.063

0.548
  recA Helicobacter pylori 26695

63.303

86.508

0.548
  recA Helicobacter pylori strain NCTC11637

63.303

86.508

0.548
  recA Streptococcus mutans UA159

57.303

94.18

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

62.08

86.508

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.43

91.005

0.532
  recA Streptococcus pyogenes NZ131

60

87.302

0.524
  recA Lactococcus lactis subsp. cremoris KW2

58.788

87.302

0.513

Multiple sequence alignment