Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DVA63_RS06665 | Genome accession | NZ_CP031113 |
| Coordinates | 1390108..1391169 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain UK39 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345595..1391169 | 1390108..1391169 | within | 0 |
Gene organization within MGE regions
Location: 1345595..1391169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVA63_RS06415 (DVA63_06455) | - | 1345646..1346449 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| DVA63_RS06420 (DVA63_06460) | - | 1346451..1348085 (+) | 1635 | WP_010931014.1 | ABC transporter ATP-binding protein | - |
| DVA63_RS06425 (DVA63_06465) | - | 1348169..1349230 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| DVA63_RS06430 (DVA63_06470) | - | 1349429..1349698 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| DVA63_RS06435 (DVA63_06475) | - | 1349702..1350226 (+) | 525 | WP_010931012.1 | DNA-binding protein | - |
| DVA63_RS06440 (DVA63_06480) | - | 1350235..1350543 (-) | 309 | Protein_1275 | MerR family DNA-binding protein | - |
| DVA63_RS06445 (DVA63_06485) | - | 1350641..1351591 (+) | 951 | WP_005012067.1 | IS481-like element IS481 family transposase | - |
| DVA63_RS06450 (DVA63_06490) | - | 1351588..1352622 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| DVA63_RS06455 (DVA63_06495) | - | 1352731..1353369 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| DVA63_RS19820 (DVA63_06500) | - | 1353366..1353626 (+) | 261 | Protein_1279 | hypothetical protein | - |
| DVA63_RS06460 (DVA63_06505) | - | 1353664..1353891 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| DVA63_RS06465 (DVA63_06510) | - | 1354014..1354727 (+) | 714 | WP_003820420.1 | class I SAM-dependent methyltransferase | - |
| DVA63_RS06470 (DVA63_06515) | - | 1354972..1355922 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| DVA63_RS06475 (DVA63_06520) | - | 1356025..1356306 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| DVA63_RS06480 (DVA63_06525) | - | 1356421..1357869 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| DVA63_RS06485 (DVA63_06530) | - | 1357979..1358929 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| DVA63_RS06490 (DVA63_06535) | dut | 1358926..1359375 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| DVA63_RS06495 (DVA63_06540) | - | 1359569..1360519 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| DVA63_RS06500 (DVA63_06545) | rpmI | 1360855..1361052 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| DVA63_RS06505 (DVA63_06550) | rplT | 1361068..1361427 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| DVA63_RS06510 (DVA63_06555) | pheS | 1361502..1362524 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| DVA63_RS06515 (DVA63_06560) | pheT | 1362537..1364954 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| DVA63_RS06520 (DVA63_06565) | - | 1364960..1365301 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| DVA63_RS06525 (DVA63_06570) | - | 1365360..1365770 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| DVA63_RS06535 (DVA63_06580) | - | 1366270..1367361 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| DVA63_RS06540 (DVA63_06585) | - | 1367545..1368141 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| DVA63_RS06545 (DVA63_06590) | - | 1368241..1368423 (-) | 183 | WP_004567479.1 | hypothetical protein | - |
| DVA63_RS06550 (DVA63_06595) | - | 1368534..1369484 (+) | 951 | WP_005012067.1 | IS481-like element IS481 family transposase | - |
| DVA63_RS06560 (DVA63_06605) | - | 1370222..1370554 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| DVA63_RS06565 (DVA63_06610) | - | 1370696..1371436 (-) | 741 | WP_023853497.1 | endonuclease | - |
| DVA63_RS06570 (DVA63_06615) | - | 1371612..1371743 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| DVA63_RS06575 (DVA63_06620) | - | 1371869..1372303 (+) | 435 | WP_010931001.1 | lipoprotein | - |
| DVA63_RS06580 (DVA63_06625) | - | 1372305..1372718 (+) | 414 | WP_003820436.1 | membrane protein | - |
| DVA63_RS06585 (DVA63_06630) | - | 1372825..1374120 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| DVA63_RS06590 (DVA63_06635) | - | 1374160..1375059 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| DVA63_RS20185 | - | 1375213..1375428 (+) | 216 | Protein_1305 | hypothetical protein | - |
| DVA63_RS06600 (DVA63_06645) | - | 1375681..1376988 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| DVA63_RS06605 (DVA63_06650) | - | 1377005..1377892 (-) | 888 | WP_010930998.1 | LysR family transcriptional regulator | - |
| DVA63_RS06610 (DVA63_06655) | - | 1378108..1379271 (+) | 1164 | WP_010930997.1 | hypothetical protein | - |
| DVA63_RS06615 (DVA63_06660) | - | 1379279..1379671 (+) | 393 | WP_010930996.1 | OB-fold domain-containing protein | - |
| DVA63_RS06620 (DVA63_06665) | - | 1379672..1380115 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| DVA63_RS06625 (DVA63_06670) | - | 1380116..1380862 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| DVA63_RS06630 (DVA63_06675) | - | 1380900..1381937 (+) | 1038 | WP_004567469.1 | extracellular solute-binding protein | - |
| DVA63_RS06635 (DVA63_06680) | - | 1381966..1383717 (+) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| DVA63_RS06640 (DVA63_06685) | - | 1383714..1384778 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| DVA63_RS06645 (DVA63_06690) | - | 1384806..1385582 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DVA63_RS06650 (DVA63_06695) | - | 1385834..1387510 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| DVA63_RS06655 (DVA63_06700) | - | 1387705..1389063 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| DVA63_RS06660 (DVA63_06705) | - | 1389179..1389868 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| DVA63_RS06665 (DVA63_06710) | recA | 1390108..1391169 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=303433 DVA63_RS06665 WP_003812760.1 1390108..1391169(+) (recA) [Bordetella pertussis strain UK39]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=303433 DVA63_RS06665 WP_003812760.1 1390108..1391169(+) (recA) [Bordetella pertussis strain UK39]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.