Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PY32053_RS03165 Genome accession   NZ_CP031078
Coordinates   639577..640647 (+) Length   356 a.a.
NCBI ID   WP_028718298.1    Uniprot ID   A0A1V0GUC2
Organism   Paracoccus yeei strain CCUG 32053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634577..645647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY32053_RS03145 (PY32053_00647) - 634649..635446 (+) 798 WP_233577712.1 hypothetical protein -
  PY32053_RS03150 (PY32053_00648) - 635506..636654 (+) 1149 WP_120440593.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PY32053_RS03155 (PY32053_00649) - 636714..638774 (+) 2061 WP_120440595.1 ATP-binding protein -
  PY32053_RS03160 (PY32053_00650) - 638759..639334 (-) 576 WP_028718299.1 sulfotransferase family 2 domain-containing protein -
  PY32053_RS03165 (PY32053_00652) recA 639577..640647 (+) 1071 WP_028718298.1 recombinase RecA Machinery gene
  PY32053_RS03170 (PY32053_00653) alaS 640844..643501 (+) 2658 WP_120440597.1 alanine--tRNA ligase -
  PY32053_RS03175 (PY32053_00654) - 643498..643788 (+) 291 WP_028718296.1 DUF1330 domain-containing protein -
  PY32053_RS03180 (PY32053_00655) - 643856..644650 (+) 795 WP_120440598.1 class II glutamine amidotransferase -
  PY32053_RS03185 (PY32053_00656) - 644887..645105 (-) 219 WP_080622013.1 hypothetical protein -
  PY32053_RS03190 (PY32053_00657) - 645230..645628 (-) 399 WP_120440600.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38313.56 Da        Isoelectric Point: 4.8893

>NTDB_id=303239 PY32053_RS03165 WP_028718298.1 639577..640647(+) (recA) [Paracoccus yeei strain CCUG 32053]
MAGATLFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAIKDRDEVVGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQY
LRDHPEVSFAIEDKIRASHGLDFGATEDSDDSLTEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=303239 PY32053_RS03165 WP_028718298.1 639577..640647(+) (recA) [Paracoccus yeei strain CCUG 32053]
ATGGCAGGGGCAACTCTTTTCGACATGAACGACAAGCGCTCGGCAGACAAGCAAAAGGCGCTGGACAGCGCGCTCGCACA
GATCGAGCGGCAGTTCGGCAAGGGCTCCATCATGAAGCTGGGGGCCGACAATCCCGTGGCCGAGATCGAGGCGACCTCGA
CCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGCCGCATCATCGAGATCTTTGGCCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGTGGTGGCCGAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGACGC
CGAACACGCGCTGGATCCGCAATACGCCAAGAAGCTGGGCGTGAATCTGGACGAACTCCTGATCAGCCAGCCCGACACGG
GCGAACAGGCGCTGGAGATCGTCGACACGCTGGTGCGCTCGGGCGCGGTGAACCTGGTGGTGGTCGACTCGGTCGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGTCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAACCCGGAAACCACGACCGGGGGCAACGCGCTGAAGTTCTACGCCTCGGTCCGGCTCGACATCCGCCGCACC
GGCGCGATCAAGGACCGGGACGAGGTGGTCGGCAACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCCTT
CCGCCAGGTCGAATTCGACATCATGTATGGCGAGGGGATCTCCAAGGTCGGCGAGTTGATCGATCTGGGCATCAAGGCCG
GCGTGGTCGAGAAATCGGGCAGCTGGTATTCCTATGGCGACGAACGCATCGGCCAGGGCCGCGAGAACGCCAAGCAGTAT
CTGCGCGACCATCCCGAGGTGTCCTTCGCCATCGAGGACAAGATCCGCGCCAGCCACGGCCTGGATTTCGGCGCGACCGA
GGACAGCGACGACAGCCTGACCGAGGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GUC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.256

92.135

0.666
  recA Glaesserella parasuis strain SC1401

67.052

97.191

0.652
  recA Neisseria gonorrhoeae MS11

68.639

94.944

0.652
  recA Neisseria gonorrhoeae MS11

68.639

94.944

0.652
  recA Neisseria gonorrhoeae strain FA1090

68.639

94.944

0.652
  recA Vibrio cholerae strain A1552

71.34

90.169

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.34

90.169

0.643
  recA Pseudomonas stutzeri DSM 10701

70.807

90.449

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.62

96.067

0.621
  recA Acinetobacter baylyi ADP1

68.847

90.169

0.621
  recA Acinetobacter baumannii D1279779

68.224

90.169

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

66.768

92.135

0.615
  recA Helicobacter pylori strain NCTC11637

65.644

91.573

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

91.573

0.598
  recA Helicobacter pylori 26695

65.031

91.573

0.596
  recA Streptococcus pneumoniae Rx1

61.471

95.506

0.587
  recA Streptococcus mitis SK321

61.471

95.506

0.587
  recA Streptococcus pneumoniae D39

61.471

95.506

0.587
  recA Streptococcus pneumoniae R6

61.471

95.506

0.587
  recA Streptococcus pneumoniae TIGR4

61.471

95.506

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

59.091

98.876

0.584
  recA Streptococcus mitis NCTC 12261

61.176

95.506

0.584
  recA Streptococcus pyogenes NZ131

61.094

92.416

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.944

0.562
  recA Streptococcus mutans UA159

60

92.697

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.011

0.548

Multiple sequence alignment