Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DTQ70_RS05045 Genome accession   NZ_CP031030
Coordinates   1201562..1202620 (+) Length   352 a.a.
NCBI ID   WP_122929796.1    Uniprot ID   A0A3G3GK50
Organism   Runella sp. SP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1196562..1207620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ70_RS05020 (DTQ70_05020) - 1197251..1198174 (-) 924 WP_122929792.1 M23 family metallopeptidase -
  DTQ70_RS05025 (DTQ70_05025) - 1198357..1198890 (+) 534 WP_028522270.1 thioesterase family protein -
  DTQ70_RS05030 (DTQ70_05030) - 1198894..1199748 (+) 855 WP_122929793.1 hypothetical protein -
  DTQ70_RS05035 (DTQ70_05035) - 1199861..1200121 (-) 261 WP_122929794.1 hypothetical protein -
  DTQ70_RS05040 (DTQ70_05040) - 1200208..1201341 (-) 1134 WP_122929795.1 DUF4932 domain-containing protein -
  DTQ70_RS05045 (DTQ70_05045) recA 1201562..1202620 (+) 1059 WP_122929796.1 recombinase RecA Machinery gene
  DTQ70_RS05050 (DTQ70_05050) - 1202673..1203812 (-) 1140 WP_122929797.1 acyl-CoA dehydrogenase family protein -
  DTQ70_RS05055 (DTQ70_05055) - 1204190..1205506 (+) 1317 WP_122929798.1 UDP-glucose/GDP-mannose dehydrogenase family protein -
  DTQ70_RS05060 (DTQ70_05060) - 1205696..1206670 (+) 975 WP_028522276.1 UDP-glucuronic acid decarboxylase family protein -
  DTQ70_RS05065 (DTQ70_05065) - 1206730..1207557 (-) 828 WP_122929799.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38241.84 Da        Isoelectric Point: 4.9005

>NTDB_id=302920 DTQ70_RS05045 WP_122929796.1 1201562..1202620(+) (recA) [Runella sp. SP2]
MADNKEQKFKALQTTLEKLDKAYGKGTVMRLSDKKVMDVEVISTGSVGLDLALGIGGLPRGRVVEIYGPESSGKTTLAMQ
TIAEAQKLGGLAAFIDAEHAFDRVYAQKLGIDTQNLLISQPDNGEQALEIAEHLISSGAIDIIVIDSVAALVPKAEIEGE
MGDSKMGLQARLMSQALRKLTGVINRTNCCCIFINQLRDKIGVMFGSPETTTGGNALKYYSSIRLDIRRIGQIKESADNI
TGNRTKVKVVKNKLAPPFKVVEFDIMYGEGVSKVGEIIDLAVELEIVKKSGSWFSYDGNRLSQGRDAVKQLLKDNPELAD
ELEAKIRAKVNEEDDALLDKLEPNIADDGTPD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=302920 DTQ70_RS05045 WP_122929796.1 1201562..1202620(+) (recA) [Runella sp. SP2]
ATGGCAGACAACAAAGAACAGAAATTTAAAGCCCTGCAAACAACACTGGAGAAGCTTGACAAAGCCTACGGAAAAGGCAC
TGTGATGCGTCTCAGTGACAAAAAAGTGATGGATGTCGAGGTAATTTCAACGGGTTCCGTTGGACTTGACCTTGCCCTAG
GAATTGGTGGTTTGCCACGCGGACGGGTCGTAGAAATTTACGGGCCAGAATCGTCAGGTAAAACTACACTTGCCATGCAG
ACCATTGCCGAAGCTCAAAAATTGGGCGGTTTGGCGGCTTTTATTGATGCAGAACACGCTTTTGACCGCGTGTATGCGCA
AAAATTGGGAATCGACACCCAAAACTTACTTATTTCACAGCCCGACAATGGTGAACAAGCGCTTGAAATCGCCGAACATT
TGATTTCGTCAGGAGCGATTGACATCATCGTGATTGACTCTGTTGCGGCGCTTGTTCCTAAAGCCGAAATTGAAGGTGAG
ATGGGCGATAGCAAAATGGGCCTCCAGGCGCGTTTGATGTCGCAAGCCTTGCGTAAACTAACGGGGGTTATTAACCGTAC
CAACTGCTGCTGTATTTTTATCAACCAGTTGCGCGATAAAATCGGCGTAATGTTTGGTAGCCCAGAAACAACCACGGGTG
GTAACGCCCTCAAGTACTATTCGTCGATTCGTTTGGATATTCGTCGGATTGGTCAAATCAAAGAAAGTGCCGATAATATC
ACAGGAAACCGTACCAAAGTGAAGGTGGTGAAAAACAAATTGGCACCTCCATTCAAAGTGGTTGAATTTGACATTATGTA
CGGCGAAGGGGTTTCTAAAGTTGGAGAAATCATCGACTTAGCCGTCGAACTAGAAATCGTGAAAAAATCAGGTTCTTGGT
TTAGCTACGATGGCAACCGCCTATCACAAGGCCGCGACGCAGTGAAGCAATTATTGAAAGATAATCCTGAATTGGCCGAT
GAACTCGAAGCTAAAATCCGTGCAAAAGTCAACGAAGAAGACGATGCACTTTTGGATAAGCTCGAACCTAACATCGCTGA
CGACGGAACGCCTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G3GK50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.601

94.034

0.673
  recA Acinetobacter baylyi ADP1

66.061

93.75

0.619
  recA Ralstonia pseudosolanacearum GMI1000

69.579

87.784

0.611
  recA Acinetobacter baumannii D1279779

65.846

92.33

0.608
  recA Glaesserella parasuis strain SC1401

63.063

94.602

0.597
  recA Neisseria gonorrhoeae MS11

63.222

93.466

0.591
  recA Neisseria gonorrhoeae strain FA1090

63.222

93.466

0.591
  recA Neisseria gonorrhoeae MS11

63.222

93.466

0.591
  recA Helicobacter pylori strain NCTC11637

62.538

94.034

0.588
  recA Helicobacter pylori 26695

62.538

94.034

0.588
  recA Vibrio cholerae strain A1552

59.767

97.443

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.767

97.443

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

93.182

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

57.386

100

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

63.091

90.057

0.568
  recA Pseudomonas stutzeri DSM 10701

61.231

92.33

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.788

93.75

0.551
  recA Streptococcus mutans UA159

56.418

95.17

0.537
  recA Streptococcus pyogenes NZ131

57.492

92.898

0.534
  recA Streptococcus mitis NCTC 12261

56.748

92.614

0.526
  recA Streptococcus pneumoniae TIGR4

56.442

92.614

0.523
  recA Streptococcus mitis SK321

56.442

92.614

0.523
  recA Streptococcus pneumoniae D39

56.442

92.614

0.523
  recA Streptococcus pneumoniae Rx1

56.442

92.614

0.523
  recA Streptococcus pneumoniae R6

56.442

92.614

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

93.182

0.52

Multiple sequence alignment