Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DT070_RS07600 Genome accession   NZ_CP031013
Coordinates   1588105..1589247 (+) Length   380 a.a.
NCBI ID   WP_122957313.1    Uniprot ID   A0A5Q3HB96
Organism   Polaromonas sp. SP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1583105..1594247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT070_RS07585 (DT070_07585) - 1584980..1586437 (-) 1458 WP_228778645.1 sensor histidine kinase -
  DT070_RS07590 (DT070_07590) - 1586647..1587321 (-) 675 WP_122954839.1 response regulator transcription factor -
  DT070_RS07595 (DT070_07595) - 1587430..1587927 (-) 498 WP_122954840.1 MarR family winged helix-turn-helix transcriptional regulator -
  DT070_RS07600 (DT070_07600) recA 1588105..1589247 (+) 1143 WP_122957313.1 recombinase RecA Machinery gene
  DT070_RS07605 (DT070_07605) recX 1589340..1589831 (+) 492 WP_122954841.1 recombination regulator RecX -
  DT070_RS07610 (DT070_07610) argC 1589927..1590838 (-) 912 WP_122954842.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DT070_RS07615 (DT070_07615) sucC 1591153..1592313 (+) 1161 WP_122954843.1 ADP-forming succinate--CoA ligase subunit beta -
  DT070_RS07620 (DT070_07620) sucD 1592333..1593226 (+) 894 WP_122954844.1 succinate--CoA ligase subunit alpha -
  DT070_RS07625 (DT070_07625) - 1593378..1594079 (+) 702 WP_369973928.1 TerC family protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40371.51 Da        Isoelectric Point: 5.3813

>NTDB_id=302864 DT070_RS07600 WP_122957313.1 1588105..1589247(+) (recA) [Polaromonas sp. SP1]
MELTSKLNPAQNPVQTAALNTEKAKALQAALAQIEKQFGKGTIMKLGDGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV
EIYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLTRSGAVDLIV
VDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVR
LDIRRIGSIKKGEEVIGNETRVKVVKNKVASPFKTAEFDILYGEGISRLGEVLDLGVAGHIVEKAGAWYAFNGEKIGQGR
DNSREFLKENPELAIEIENKVRESLGIPLVQVAGGVDAPAEKPAKADKAEKAEKPAKAAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=302864 DT070_RS07600 WP_122957313.1 1588105..1589247(+) (recA) [Polaromonas sp. SP1]
ATGGAACTGACCAGCAAACTGAACCCCGCCCAAAACCCTGTACAGACTGCGGCCCTGAACACCGAAAAGGCCAAGGCCCT
GCAAGCCGCCCTGGCCCAGATCGAAAAGCAGTTCGGCAAAGGCACCATCATGAAGCTGGGCGATGGCGAGGTGATCGAGG
ACATCCAGGTCGTTTCCACCGGCTCCCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCACGCGGCCGTGTGGTT
GAAATCTACGGCCCTGAGTCGTCCGGCAAAACCACGCTGACCCTGCAGGTCATCGCCGAAATGCAAAAACTGGGTGGCAC
CTGCGCCTTCGTCGATGCCGAGCACGCCCTGGACATCCAGTACGCGCAAAAGCTGGGCGTCAACCTGCAAGACCTGCTGA
TCAGCCAGCCCGACACCGGCGAGCAGGCGCTTGAAATCGTTGACTCGCTGACCCGCTCCGGCGCGGTCGACCTGATCGTG
GTCGACTCGGTGGCGGCGCTCACGCCCAAGGCCGAGCTCGAAGGTGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCG
CCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCACCATCAAGAAGGCCAACTGCATGGTCATCTTCATCAACCAGATCC
GCATGAAGATCGGCGTGATGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCTGTGCGC
CTCGATATCCGCCGCATCGGCTCCATCAAGAAGGGCGAAGAAGTCATCGGCAACGAAACCCGGGTCAAGGTGGTCAAGAA
CAAGGTGGCGTCGCCGTTCAAGACGGCGGAGTTCGACATCCTCTACGGCGAGGGCATCAGCCGGCTGGGCGAGGTGCTCG
ATTTGGGTGTGGCCGGCCACATCGTCGAAAAGGCCGGCGCCTGGTATGCCTTCAACGGCGAAAAAATCGGACAGGGCCGC
GACAACTCGCGTGAGTTCCTGAAAGAAAACCCCGAACTCGCCATCGAGATCGAAAACAAGGTGCGTGAATCGCTCGGCAT
CCCTCTGGTGCAGGTTGCCGGCGGCGTTGACGCCCCAGCCGAAAAGCCGGCCAAGGCCGACAAAGCCGAAAAGGCTGAAA
AGCCCGCCAAGGCTGCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3HB96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.682

87.632

0.716
  recA Pseudomonas stutzeri DSM 10701

70

92.105

0.645
  recA Neisseria gonorrhoeae MS11

69.364

91.053

0.632
  recA Neisseria gonorrhoeae strain FA1090

69.364

91.053

0.632
  recA Neisseria gonorrhoeae MS11

69.364

91.053

0.632
  recA Acinetobacter baylyi ADP1

69.275

90.789

0.629
  recA Acinetobacter baumannii D1279779

71.56

86.053

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.606

86.842

0.613
  recA Vibrio cholerae strain A1552

70.606

86.842

0.613
  recA Glaesserella parasuis strain SC1401

71.296

85.263

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.062

88.684

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

86.842

0.579
  recA Helicobacter pylori 26695

64.242

86.842

0.558
  recA Helicobacter pylori strain NCTC11637

63.939

86.842

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

86.053

0.545
  recA Streptococcus mutans UA159

59.821

88.421

0.529
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

85.789

0.526
  recA Streptococcus pyogenes NZ131

58.529

89.474

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

84.474

0.521
  recA Lactococcus lactis subsp. cremoris KW2

58.631

88.421

0.518
  recA Streptococcus pneumoniae R6

59.159

87.632

0.518
  recA Streptococcus pneumoniae TIGR4

59.159

87.632

0.518
  recA Streptococcus pneumoniae D39

59.159

87.632

0.518
  recA Streptococcus pneumoniae Rx1

59.159

87.632

0.518
  recA Streptococcus mitis SK321

58.859

87.632

0.516
  recA Streptococcus mitis NCTC 12261

58.859

87.632

0.516

Multiple sequence alignment