Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DT536_RS11420 Genome accession   NZ_CP031011
Coordinates   2351302..2352345 (-) Length   347 a.a.
NCBI ID   WP_005401034.1    Uniprot ID   A0A1T1JM42
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2346302..2357345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS11385 (DT536_11385) fabZ 2346684..2347169 (+) 486 WP_010326983.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DT536_RS11390 (DT536_11390) lpxA 2347166..2347954 (+) 789 WP_005401031.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  DT536_RS11395 (DT536_11395) - 2348016..2348861 (-) 846 WP_058869820.1 YbgF trimerization domain-containing protein -
  DT536_RS16845 - 2349266..2350480 (+) 1215 WP_227509215.1 hypothetical protein -
  DT536_RS11415 (DT536_11415) - 2350591..2351196 (-) 606 WP_058869819.1 regulatory protein RecX -
  DT536_RS11420 (DT536_11420) recA 2351302..2352345 (-) 1044 WP_005401034.1 recombinase RecA Machinery gene
  DT536_RS11425 (DT536_11425) - 2352460..2352903 (-) 444 WP_004696588.1 RNA-binding S4 domain-containing protein -
  DT536_RS11430 (DT536_11430) - 2352896..2353570 (-) 675 WP_004981908.1 HAD-IA family hydrolase -
  DT536_RS11435 (DT536_11435) - 2354238..2354483 (+) 246 WP_004696593.1 hypothetical protein -
  DT536_RS11440 (DT536_11440) - 2354804..2355055 (+) 252 WP_058869818.1 hypothetical protein -
  DT536_RS11445 (DT536_11445) - 2355553..2356407 (+) 855 WP_058869817.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DT536_RS11450 (DT536_11450) - 2356462..2357193 (+) 732 WP_058869885.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37602.01 Da        Isoelectric Point: 5.0433

>NTDB_id=302851 DT536_RS11420 WP_005401034.1 2351302..2352345(-) (recA) [Acinetobacter johnsonii strain LXL_C1]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPVEENEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=302851 DT536_RS11420 WP_005401034.1 2351302..2352345(-) (recA) [Acinetobacter johnsonii strain LXL_C1]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATCGATGCAGAACACGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAATCTACTGGTTTCTCAGCCTGACCATGGTGAGCAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCCATTGACCTCATTGTTGTCGACTCTGTTGCGGCATTGACACCACGTGCGGAAATTGAAGGTGAAATGGGTGAC
TCACACATGGGCCTTCAAGCGCGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCAAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGTCGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTGAAAGTTGTCAAAAACAAAATGGCACCTCCATTCCGCGAAGCGCTCTTCCAAATCCTGTATGGTAAAGGTGT
CAACCATTTGGGCGAACTTGTAGACTTGGCTGTTCAACAAGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCACCTTGAAGAAAACCCTCAGTTGGCTGAAACCATTGAGAAA
ATCATTCGAGAAAAACTACTGACGACTGCAAACGCTGCGCCTGTAGAAGAGAATGAAGAAGAGCCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JM42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922
  recA Acinetobacter baumannii D1279779

91.04

99.712

0.908
  recA Pseudomonas stutzeri DSM 10701

74.063

100

0.741
  recA Vibrio cholerae strain A1552

71.429

98.847

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

98.847

0.706
  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677
  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614
  recA Helicobacter pylori strain NCTC11637

62.202

96.83

0.602
  recA Helicobacter pylori 26695

61.905

96.83

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mutans UA159

61.538

93.66

0.576
  recA Streptococcus mitis SK321

61.3

93.084

0.571
  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

57.567

97.118

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545

Multiple sequence alignment