Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AVIN_RS09110 Genome accession   NC_012560
Coordinates   1973188..1973787 (+) Length   199 a.a.
NCBI ID   WP_012700602.1    Uniprot ID   C1DEK8
Organism   Azotobacter vinelandii DJ     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968188..1978787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS09095 (Avin_19810) - 1968383..1969171 (+) 789 WP_012700599.1 hydroxypyruvate isomerase family protein -
  AVIN_RS09100 (Avin_19830) dnaX 1970651..1972735 (+) 2085 WP_012700600.1 DNA polymerase III subunit gamma/tau -
  AVIN_RS09105 (Avin_19840) - 1972746..1973072 (+) 327 WP_012700601.1 YbaB/EbfC family nucleoid-associated protein -
  AVIN_RS09110 (Avin_19850) recR 1973188..1973787 (+) 600 WP_012700602.1 recombination mediator RecR Machinery gene
  AVIN_RS09115 (Avin_19860) - 1973897..1974205 (-) 309 WP_012700603.1 cyd operon YbgE family protein -
  AVIN_RS24750 (Avin_19870) cydX 1974180..1974296 (-) 117 WP_012700604.1 cytochrome bd-I oxidase subunit CydX -
  AVIN_RS09125 (Avin_19880) cydB 1974372..1975511 (-) 1140 WP_012700605.1 cytochrome d ubiquinol oxidase subunit II -
  AVIN_RS09130 (Avin_19890) - 1975522..1977135 (-) 1614 WP_012700606.1 cytochrome ubiquinol oxidase subunit I -
  AVIN_RS24755 cydP 1977135..1977347 (-) 213 WP_041807122.1 cytochrome oxidase putative small subunit CydP -
  AVIN_RS09135 (Avin_19910) fnr 1977838..1978572 (-) 735 WP_012700607.1 fumarate/nitrate reduction transcriptional regulator Fnr -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21461.58 Da        Isoelectric Point: 5.5528

>NTDB_id=30242 AVIN_RS09110 WP_012700602.1 1973188..1973787(+) (recR) [Azotobacter vinelandii DJ]
MSFSPLIRQLIDALRILPGVGQKTAQRMALHLLERDRSGGLRLAQALTQALEHVGHCRQCRTLSEDELCPQCADPRRDDS
LLCVVQGPMDVFAIEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELLARVEQGAFEEVIIATNPTVEGEATAHYIAQTLA
SSDVTVSRIAHGVPLGGELELVDGGTLSHALAGRRPIDL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=30242 AVIN_RS09110 WP_012700602.1 1973188..1973787(+) (recR) [Azotobacter vinelandii DJ]
ATGAGCTTCAGTCCGCTGATCCGACAACTCATCGATGCCCTGCGCATCCTTCCCGGGGTGGGACAGAAGACCGCCCAGCG
CATGGCTCTGCATCTGCTCGAACGTGATCGCAGCGGCGGCTTGCGTTTGGCTCAGGCGCTCACCCAGGCGCTCGAGCATG
TCGGTCATTGCCGGCAATGCCGGACCCTGAGCGAGGACGAACTCTGTCCGCAGTGCGCTGATCCGCGTCGCGACGATTCC
CTGCTCTGTGTGGTGCAGGGACCGATGGACGTATTCGCCATAGAGCAAACGGGCTACCGTGGCCGCTATTTCGTGCTCAA
GGGACACCTTTCCCCCCTGGACGGCCTCGGCCCAGAGGCTATTGGCATTCCTGAGTTGTTGGCGCGAGTCGAGCAGGGAG
CTTTCGAGGAAGTGATCATCGCCACCAATCCAACGGTGGAAGGCGAGGCTACGGCTCATTACATCGCGCAGACTCTGGCG
TCCAGCGATGTCACGGTTTCCCGTATCGCCCATGGTGTGCCGCTGGGCGGCGAACTGGAGTTGGTGGACGGCGGTACCTT
GAGCCACGCTCTGGCCGGACGCAGGCCGATCGATCTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DEK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

99.497

0.477
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.492

0.477

Multiple sequence alignment