Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYNPCC7002_RS02110 Genome accession   NC_010475
Coordinates   447199..448245 (-) Length   348 a.a.
NCBI ID   WP_012306060.1    Uniprot ID   A0AAE8IPT9
Organism   Picosynechococcus sp. PCC 7002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442199..453245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS02095 (SYNPCC7002_A0423) hetR 443613..444557 (-) 945 WP_234991360.1 heterocyst differentiation master regulator HetR -
  SYNPCC7002_RS02100 (SYNPCC7002_A0424) - 444802..445926 (-) 1125 WP_012306058.1 aldo/keto reductase -
  SYNPCC7002_RS02105 (SYNPCC7002_A0425) - 445950..447020 (-) 1071 WP_232308948.1 tetratricopeptide repeat protein -
  SYNPCC7002_RS02110 (SYNPCC7002_A0426) recA 447199..448245 (-) 1047 WP_012306060.1 recombinase RecA Machinery gene
  SYNPCC7002_RS02115 (SYNPCC7002_A0427) ribBA 448414..450078 (-) 1665 WP_012306061.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  SYNPCC7002_RS02120 (SYNPCC7002_A0428) - 450157..451818 (-) 1662 WP_012306062.1 ATP-binding protein -
  SYNPCC7002_RS02125 (SYNPCC7002_A0429) - 452031..452261 (-) 231 WP_030007054.1 hypothetical protein -
  SYNPCC7002_RS02130 (SYNPCC7002_A0430) speD 452633..453016 (-) 384 WP_041443332.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37243.55 Da        Isoelectric Point: 5.5150

>NTDB_id=30242 SYNPCC7002_RS02110 WP_012306060.1 447199..448245(-) (recA) [Picosynechococcus sp. PCC 7002]
MSAISNNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQMKVATIPSGALTLDQAMGGGFPRGRIVEIYGPESSGKTTVAL
HAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQPDNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEG
EMGDVQVGLQARLMSKALRKIAGNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGSEG
EFGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNIAQGRDNAVKYLEENPDVA
AIVTQKVRENLDMSSMGFGDEHHTTEEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=30242 SYNPCC7002_RS02110 WP_012306060.1 447199..448245(-) (recA) [Picosynechococcus sp. PCC 7002]
ATGTCAGCCATCAGCAATAATCCCGACAAAGAAAAGGCCCTAAACCTAGTGCTCAACCAAATTGAGCGTAACTTTGGTAA
GGGGGCGATTATGCGGTTGGGGGATGCCGCCCAGATGAAGGTCGCAACCATTCCCAGTGGGGCTTTGACCCTAGATCAGG
CGATGGGCGGTGGGTTTCCGCGTGGGAGAATTGTGGAAATCTATGGCCCGGAGAGTTCTGGGAAAACGACGGTTGCTCTC
CATGCGATCGCCGAAGTCCAAAAAGCGGGTGGCGTCGCTGCTTTTATTGACGCTGAACATGCCCTGGATCCCACCTATTC
CGCGGCCTTGGGAGTTGATATTGAAAACCTGCTGGTGGCCCAACCCGATAACGGCGAATCTGCTTTAGAAATTGCCGACC
AATTGGTTCGCTCGGCGGCTGTGGATCTAATCGTGATTGACTCGGTGGCGGCCCTTGTGCCCAGGGCAGAGATCGAAGGA
GAAATGGGCGATGTGCAGGTGGGTCTCCAGGCCCGTCTCATGAGTAAAGCCCTCCGTAAAATTGCCGGGAATATGGGGCG
TTCGGGTTGTACGGTGATTTTTCTCAATCAATTGCGCCAAAAAATTGGCATTAGTTACGGCAATCCAGAGGTAACCACCG
GGGGAACCGCCCTCAAATTTTATGCCTCTGTGCGCCTAGATATCCGCCGCATCCAAACCCTCAAGAAAGGGAGCGAAGGG
GAATTTGGCATCCGCGCCAAGGTTAAAGTGGCGAAAAATAAAGTTGCTCCACCGTTCCGCATTGCCGAATTTGACATTAT
TTTTGGCAAAGGAATCTCCCGTGTGGGCTGCATGCTAGACCTCGCGGAACAAACAGGTGTCATTACCCGCAAAGGCGCTT
GGTACAGCTATGAAGGGGATAACATTGCCCAGGGTCGCGACAATGCAGTGAAGTATCTAGAGGAAAATCCGGACGTTGCG
GCGATCGTCACCCAAAAAGTCCGGGAAAATCTGGATATGAGTTCCATGGGTTTCGGGGATGAGCACCACACCACCGAAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.584

97.989

0.603
  recA Acinetobacter baumannii D1279779

61.963

93.678

0.58
  recA Ralstonia pseudosolanacearum GMI1000

62.579

91.379

0.572
  recA Pseudomonas stutzeri DSM 10701

60

94.828

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.771

97.989

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

58.485

94.828

0.555
  recA Glaesserella parasuis strain SC1401

59.752

92.816

0.555
  recA Helicobacter pylori 26695

58.716

93.966

0.552
  recA Helicobacter pylori strain NCTC11637

58.716

93.966

0.552
  recA Streptococcus mutans UA159

55.814

98.851

0.552
  recA Vibrio cholerae strain A1552

58.589

93.678

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.589

93.678

0.549
  recA Streptococcus pneumoniae TIGR4

55.523

98.851

0.549
  recA Streptococcus pneumoniae Rx1

55.523

98.851

0.549
  recA Streptococcus pneumoniae D39

55.523

98.851

0.549
  recA Streptococcus pneumoniae R6

55.523

98.851

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.394

98.563

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.057

95.69

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.025

93.103

0.54
  recA Streptococcus mitis SK321

58.025

93.103

0.54
  recA Neisseria gonorrhoeae MS11

58.075

92.529

0.537
  recA Neisseria gonorrhoeae MS11

58.075

92.529

0.537
  recA Neisseria gonorrhoeae strain FA1090

58.075

92.529

0.537
  recA Streptococcus mitis NCTC 12261

57.407

93.103

0.534
  recA Streptococcus pyogenes NZ131

57.099

93.103

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.807

95.402

0.494

Multiple sequence alignment