Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DRW48_RS08805 Genome accession   NZ_CP030918
Coordinates   1810698..1811780 (-) Length   360 a.a.
NCBI ID   WP_114076077.1    Uniprot ID   A0A344PK68
Organism   Paracoccus suum strain SC2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805698..1816780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRW48_RS16300 - 1805728..1805943 (+) 216 WP_241963217.1 DUF2842 domain-containing protein -
  DRW48_RS08780 (DRW48_08780) - 1805940..1806590 (+) 651 WP_338418412.1 thiamine diphosphokinase -
  DRW48_RS08785 (DRW48_08785) purQ 1806594..1807250 (-) 657 WP_114076074.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  DRW48_RS08790 (DRW48_08790) - 1807370..1808584 (-) 1215 WP_114076075.1 NADP-dependent isocitrate dehydrogenase -
  DRW48_RS15900 - 1808737..1809231 (-) 495 WP_162784704.1 hypothetical protein -
  DRW48_RS08800 (DRW48_08800) trpB 1809328..1810554 (-) 1227 WP_114076076.1 tryptophan synthase subunit beta -
  DRW48_RS08805 (DRW48_08805) recA 1810698..1811780 (-) 1083 WP_114076077.1 recombinase RecA Machinery gene
  DRW48_RS08810 (DRW48_08810) - 1812035..1812637 (+) 603 WP_114076078.1 hypothetical protein -
  DRW48_RS08815 (DRW48_08815) - 1812619..1813722 (-) 1104 WP_114076079.1 alpha/beta hydrolase -
  DRW48_RS08820 (DRW48_08820) - 1813729..1814013 (-) 285 WP_114076080.1 SCP2 sterol-binding domain-containing protein -
  DRW48_RS08825 (DRW48_08825) - 1814128..1814712 (+) 585 WP_114076081.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38834.31 Da        Isoelectric Point: 4.9845

>NTDB_id=302236 DRW48_RS08805 WP_114076077.1 1810698..1811780(-) (recA) [Paracoccus suum strain SC2-6]
MASVNIIDMSDKRDDKKAGERQKALDSALAQIERQFGKGSIMKLGKDSPVMEIEATSTGSLGLDVALGIGGLPKGRIIEI
FGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVD
SVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLD
IRRIGSVKDRDEVVGNQTRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGREN
AKQYLRDNPDMAYAIEDKIRASHGLDFGISEDSAAVTEDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=302236 DRW48_RS08805 WP_114076077.1 1810698..1811780(-) (recA) [Paracoccus suum strain SC2-6]
ATGGCAAGCGTGAACATCATCGACATGAGCGACAAGCGCGACGACAAGAAGGCCGGCGAGCGGCAAAAAGCGCTGGACAG
CGCCCTGGCACAGATCGAACGGCAGTTCGGTAAGGGCTCGATCATGAAACTGGGCAAGGACAGCCCGGTAATGGAGATCG
AGGCAACCTCGACGGGCTCGCTGGGCCTCGATGTCGCGCTGGGCATCGGCGGCCTGCCCAAGGGCCGCATCATCGAGATT
TTCGGCCCGGAAAGCAGTGGCAAGACCACGCTGACGCTGCATGTGGTGGCCGAAGAGCAGAAAAAGGGCGGCGTCTGCGC
GTTCGTCGACGCCGAGCACGCGCTCGATCCGCAATATGCCAAGAAGCTGGGCGTGAACCTGGACGAGCTGCTGATCAGCC
AGCCCGACACCGGCGAGCAGGCGCTCGAGATCGTGGACACGCTGGTCCGCTCGGGCGCGGTCAGCCTGGTGGTGGTCGAC
TCGGTCGCAGCCCTGACCCCCAAGTCCGAGATCGAGGGCGACATGGGTGACATGCAGATGGGCAGCCAGGCCCGCCTGAT
GAGCCAGGCCATGCGCAAGCTGACCGCCAGCATCGGCCGCAGCAACTGCATGGTGATCTTCATCAACCAGATCCGCATGA
AGATCGGGGTGATGTTCGGCAGCCCGGAGACGACGACTGGCGGCAACGCGCTGAAGTTCTACGCCAGCGTGCGCCTCGAC
ATCCGCCGCATCGGCTCGGTCAAGGACCGCGACGAGGTCGTCGGAAACCAGACGCGGGTGAAGGTGGTCAAGAACAAGGT
CGCCCCGCCCTTCCGCCAGGTCGAGTTCGACATCATGTATGGCGAGGGCATCAGCAAGGTCGGTGAGTTGATCGACCTCG
GCGTCAAGGCAGGCGTGGTCGAAAAATCCGGCGCCTGGTATTCCTACGGCGACGAGCGCATCGGCCAGGGCCGCGAGAAC
GCCAAGCAGTACCTGCGGGACAATCCCGACATGGCCTATGCCATCGAGGACAAGATCCGCGCCAGCCACGGCCTCGACTT
TGGCATCAGCGAGGATAGCGCTGCGGTCACCGAGGACGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344PK68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.885

87.222

0.644
  recA Neisseria gonorrhoeae MS11

67.742

94.722

0.642
  recA Neisseria gonorrhoeae MS11

67.742

94.722

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.742

94.722

0.642
  recA Pseudomonas stutzeri DSM 10701

71.028

89.167

0.633
  recA Glaesserella parasuis strain SC1401

70.717

89.167

0.631
  recA Vibrio cholerae strain A1552

70.625

88.889

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.625

88.889

0.628
  recA Acinetobacter baylyi ADP1

69.113

90.833

0.628
  recA Acinetobacter baumannii D1279779

69.688

88.889

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.465

91.944

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

66.972

90.833

0.608
  recA Helicobacter pylori 26695

66.258

90.556

0.6
  recA Helicobacter pylori strain NCTC11637

66.258

90.556

0.6
  recA Streptococcus mitis SK321

59.887

98.333

0.589
  recA Streptococcus pneumoniae R6

59.829

97.5

0.583
  recA Streptococcus pneumoniae Rx1

59.829

97.5

0.583
  recA Streptococcus pneumoniae D39

59.829

97.5

0.583
  recA Streptococcus pneumoniae TIGR4

59.829

97.5

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

90.556

0.583
  recA Streptococcus mitis NCTC 12261

61.062

94.167

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

59.824

94.722

0.567
  recA Streptococcus mutans UA159

59.475

95.278

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60.417

93.333

0.564
  recA Streptococcus pyogenes NZ131

60.479

92.778

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

90.556

0.547

Multiple sequence alignment