Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DRB87_RS19305 Genome accession   NZ_CP030849
Coordinates   4280013..4281077 (-) Length   354 a.a.
NCBI ID   WP_017232934.1    Uniprot ID   A0A5E4VNS0
Organism   Pandoraea sp. XY-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4275013..4286077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRB87_RS19280 (DRB87_19375) - 4275362..4276090 (-) 729 WP_130027039.1 TerC family protein -
  DRB87_RS19285 (DRB87_19380) sucD 4276246..4277127 (-) 882 WP_017232938.1 succinate--CoA ligase subunit alpha -
  DRB87_RS19290 (DRB87_19385) sucC 4277210..4278375 (-) 1166 Protein_3876 ADP-forming succinate--CoA ligase subunit beta -
  DRB87_RS19295 (DRB87_19390) - 4278372..4279058 (-) 687 WP_017232936.1 DUF2889 domain-containing protein -
  DRB87_RS19300 (DRB87_19395) recX 4279368..4279913 (-) 546 WP_130027040.1 recombination regulator RecX -
  DRB87_RS19305 (DRB87_19400) recA 4280013..4281077 (-) 1065 WP_017232934.1 recombinase RecA Machinery gene
  DRB87_RS19310 (DRB87_19405) - 4281280..4282119 (+) 840 Protein_3880 response regulator transcription factor -
  DRB87_RS19315 (DRB87_19410) - 4282103..4283661 (+) 1559 Protein_3881 sensor histidine kinase N-terminal domain-containing protein -
  DRB87_RS19320 (DRB87_19415) - 4283833..4285491 (+) 1659 WP_130027041.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37755.10 Da        Isoelectric Point: 4.8247

>NTDB_id=301881 DRB87_RS19305 WP_017232934.1 4280013..4281077(-) (recA) [Pandoraea sp. XY-2]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDSEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKVGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPDIAHEIENKVRASLGVTAINETGEIEADDEV

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=301881 DRB87_RS19305 WP_017232934.1 4280013..4281077(-) (recA) [Pandoraea sp. XY-2]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTGGCCGCCGCCCTCGCGCAGATCGA
AAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACAGCGAGGTCGAAGCGGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGCCTGGACATCGCGCTGGGCGTGGGCGGCCTGCCGCGTGGGCGCGTGATCGAAATCTACGGTCCGGAATCGTCG
GGTAAGACTACGCTCACGCTGCAAGTCGTGGCGGAAATGCAGAAGGTCGGTGGCACTTGCGCGTTTATCGACGCCGAGCA
CGCCCTCGATGTCGGGTACGCCAACAAACTGGGCGTGTCGGTGCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAAC
AAGCCCTCGAAATCGCCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTCATCGTCATCGACTCGGTGGCGGCGCTGGTG
CCGAAGGCCGAAATCGAAGGGGAAATGGGCGATTCGCTGCCGGGTCTGCAGGCCCGTCTGATGTCCCAGGCCCTGCGCAA
GCTGACCGGTACCATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGGATGAAGATCGGTGTGATGTTCG
GTAACCCGGAAACCACGACGGGCGGTAATGCACTGAAGTTCTACTCGTCGGTGCGTCTGGACATTCGCCGGATCGGCTCG
ATCAAGAAGGGTGACGAGGTCGTCGGCAACGAAACTCGCGTCAAGGTTGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCGATTTTCGACATCCTTTACGGCCAAGGGATTTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGAACGCGAAGATCG
TCGAGAAGGCTGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGCAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGATATCGCCCACGAGATCGAAAATAAGGTACGCGCATCGCTCGGCGTCACGGCAATCAACGAGACCGGCGA
GATCGAAGCAGACGACGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4VNS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.593

100

0.856
  recA Neisseria gonorrhoeae strain FA1090

73.256

97.175

0.712
  recA Neisseria gonorrhoeae MS11

73.256

97.175

0.712
  recA Neisseria gonorrhoeae MS11

73.256

97.175

0.712
  recA Pseudomonas stutzeri DSM 10701

71.637

96.61

0.692
  recA Acinetobacter baumannii D1279779

71.137

96.893

0.689
  recA Acinetobacter baylyi ADP1

71.976

95.763

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

92.373

0.669
  recA Vibrio cholerae strain A1552

72.477

92.373

0.669
  recA Glaesserella parasuis strain SC1401

68.895

97.175

0.669
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

92.373

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.09

0.602
  recA Helicobacter pylori 26695

64.438

92.938

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

92.938

0.596
  recA Helicobacter pylori strain NCTC11637

64.134

92.938

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

61.765

96.045

0.593
  recA Streptococcus pneumoniae D39

59.714

98.87

0.59
  recA Streptococcus pneumoniae Rx1

59.714

98.87

0.59
  recA Streptococcus pneumoniae R6

59.714

98.87

0.59
  recA Streptococcus pneumoniae TIGR4

59.714

98.87

0.59
  recA Streptococcus mitis NCTC 12261

59.885

98.588

0.59
  recA Streptococcus mitis SK321

59.599

98.588

0.588
  recA Streptococcus mutans UA159

60.174

97.175

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

96.045

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.725

93.503

0.568
  recA Streptococcus pyogenes NZ131

60.79

92.938

0.565

Multiple sequence alignment