Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DSM08_RS03700 Genome accession   NZ_CP030848
Coordinates   883756..884781 (-) Length   341 a.a.
NCBI ID   WP_149524880.1    Uniprot ID   -
Organism   Sphingobacterium hotanense strain AMCC101218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878756..889781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM08_RS03670 - 879089..879676 (-) 588 WP_149524874.1 porin family protein -
  DSM08_RS03675 - 879747..879962 (+) 216 WP_149524875.1 hypothetical protein -
  DSM08_RS03680 - 879964..880308 (+) 345 WP_149524876.1 tRNA-binding protein -
  DSM08_RS03685 - 880308..880784 (+) 477 WP_149524877.1 nucleoside deaminase -
  DSM08_RS03690 - 880890..881498 (+) 609 WP_149524878.1 superoxide dismutase -
  DSM08_RS03695 pruA 881880..883514 (+) 1635 WP_149524879.1 L-glutamate gamma-semialdehyde dehydrogenase -
  DSM08_RS03700 recA 883756..884781 (-) 1026 WP_149524880.1 recombinase RecA Machinery gene
  DSM08_RS03705 nth 884913..885584 (-) 672 WP_149524881.1 endonuclease III -
  DSM08_RS03710 - 885735..887060 (-) 1326 WP_149524882.1 SGNH/GDSL hydrolase family protein -
  DSM08_RS03715 - 887080..888300 (-) 1221 WP_149524883.1 OmpP1/FadL family transporter -
  DSM08_RS03720 tpx 888476..888973 (+) 498 WP_149524884.1 thiol peroxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36680.09 Da        Isoelectric Point: 4.8799

>NTDB_id=301864 DSM08_RS03700 WP_149524880.1 883756..884781(-) (recA) [Sphingobacterium hotanense strain AMCC101218]
MSNSDKLKALQLTLDKLEKSFGKGTIMKLGDTAVEPIESISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDIENLLISQPDHGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
ESKMGLQARLMSQALRKLTGTIAKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDADEVAGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYGIVKKSGSWFSYGDTKLGQGRDAVKSLLLDNPDLSDELE
AKIRAEVTGQNLDETILNEDE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=301864 DSM08_RS03700 WP_149524880.1 883756..884781(-) (recA) [Sphingobacterium hotanense strain AMCC101218]
ATGAGCAACTCAGACAAATTAAAGGCGCTACAGCTTACTTTAGATAAATTAGAAAAATCGTTCGGTAAAGGTACGATCAT
GAAATTAGGTGATACTGCAGTAGAGCCTATCGAGTCTATTTCTACGGGATCCTTAGGTTTAGATATCGCCTTAGGTATTG
GCGGTGTTCCTAAAGGCCGTATCATTGAGATTTACGGTCCTGAATCATCAGGTAAGACAACTTTAGCGACGCATATTGTT
GCGGAAGCACAGAAAAAAGGTGGTATTGCTGCAATCATTGATGCGGAGCACGCTTTTGATAAGTACTACGCTCAGAAATT
AGGTGTTGATATCGAGAACTTATTGATTTCTCAGCCTGACCATGGTGAGCAAGCGCTAGAAATTGCTGACAACTTAATCC
GTTCGGGAGCTATTGATGTCATCGTAATTGACTCGGTTGCTGCATTGGTGCCAAAGGGAGAGATTGAAGGTGAAATGGGT
GAGTCGAAGATGGGTCTGCAAGCGCGTTTAATGTCGCAAGCCCTACGTAAGCTTACAGGTACGATCGCAAAAACAAACTG
TTGTTGTATATTCATCAACCAATTGCGTGAGAAAATTGGTGTGATGTTCGGTAATCCAGAAACGACTACAGGTGGTAATG
CGCTTAAGTTCTACGCTTCTGTTCGTTTAGACATCCGTCGTACATCGCAGATCAAAGATGCTGATGAAGTAGCAGGTAAC
CGTGTTAAAGTAAAAATCGTTAAGAATAAAGTAGCTCCTCCATTCCGTATTGCTGAATTTGACATTATGTTCGGCGAAGG
TATTTCTAAGGTTGGTGAAATCATTGACTTAGGTGTAGAATATGGAATCGTTAAGAAATCAGGTTCTTGGTTTAGCTATG
GAGATACAAAATTAGGTCAAGGTCGTGATGCTGTGAAGTCGCTATTGTTAGATAACCCTGATTTATCAGATGAGTTAGAA
GCAAAAATTAGAGCAGAGGTTACAGGTCAGAATTTAGACGAGACGATCTTAAACGAAGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.359

97.947

0.689
  recA Helicobacter pylori 26695

66.061

96.774

0.639
  recA Helicobacter pylori strain NCTC11637

65.758

96.774

0.636
  recA Neisseria gonorrhoeae strain FA1090

66.975

95.015

0.636
  recA Neisseria gonorrhoeae MS11

66.975

95.015

0.636
  recA Neisseria gonorrhoeae MS11

66.975

95.015

0.636
  recA Ralstonia pseudosolanacearum GMI1000

69.805

90.323

0.63
  recA Acinetobacter baylyi ADP1

63.609

99.12

0.63
  recA Acinetobacter baumannii D1279779

62.757

100

0.628
  recA Pseudomonas stutzeri DSM 10701

62.941

99.707

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.944

94.721

0.625
  recA Glaesserella parasuis strain SC1401

66.144

93.548

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

94.135

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

94.428

0.592
  recA Vibrio cholerae strain A1552

62.733

94.428

0.592
  recA Streptococcus mitis NCTC 12261

58.601

100

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.043

95.601

0.584
  recA Streptococcus mitis SK321

60.245

95.894

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

95.308

0.578
  recA Streptococcus pneumoniae R6

60.429

95.601

0.578
  recA Streptococcus pneumoniae TIGR4

60.429

95.601

0.578
  recA Streptococcus pneumoniae Rx1

60.429

95.601

0.578
  recA Streptococcus pneumoniae D39

60.429

95.601

0.578
  recA Streptococcus pyogenes NZ131

60.802

95.015

0.578
  recA Streptococcus mutans UA159

58.589

95.601

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

96.188

0.537

Multiple sequence alignment