Detailed information NTG0299512

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: DOL89_RS05475
• Genome accession: NZ_CP030126
• Coordinates: 1161443..1162519 (+)
• Length: 358 a.a.
• NCBI ID: WP_119678223.1
• Uniprot ID: -
• Organism: Indioceanicola profundi strain SCSIO 08040
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1156443..1167519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOL89_RS05460	flhB	1157169..1158257 (+)	1089	WP_119678221.1	flagellar biosynthesis protein FlhB	-
DOL89_RS05465	-	1158317..1160545 (+)	2229	WP_225889909.1	PAS domain-containing sensor histidine kinase	-
DOL89_RS05470	-	1160562..1161023 (-)	462	WP_162937347.1	hypothetical protein	-
DOL89_RS05475	recA	1161443..1162519 (+)	1077	WP_119678223.1	recombinase RecA	Machinery gene
DOL89_RS05480	alaS	1162727..1165423 (+)	2697	WP_119678224.1	alanine--tRNA ligase	-
DOL89_RS05485	-	1165517..1166365 (+)	849	WP_119678225.1	MoxR family ATPase	-
DOL89_RS05490	-	1166372..1167178 (-)	807	WP_119678226.1	DUF2243 domain-containing protein	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 37958.60 Da
• Isoelectric Point: 6.1614

>NTDB_id=299512 DOL89_RS05475 WP_119678223.1 1161443..1162519(+) (recA) [Indioceanicola profundi strain SCSIO 08040]
MSAAPLRLVETPMDKQKALDAALGQIERAFGKGSIMKLGTRELPTEADVISSGSLGLDIALGIGGFPRGRIIEIYGPESS
GKTTLALHAIAQAQKTGGVCAFVDAEHALDPSYARKLGVDIDELLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALV
PRAELEGEMGDSHVGLHARLMSQALRKLTSSISKSKCMVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA
IKDRDTVVGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVEKSGAWFSYDGTRIGQGRENAKTFLR
NNPEISGAIEQKVRANAGIVAGAMMGTPEADADASSPD

Nucleotide

• Length: 1077 bp

>NTDB_id=299512 DOL89_RS05475 WP_119678223.1 1161443..1162519(+) (recA) [Indioceanicola profundi strain SCSIO 08040]
ATGTCGGCAGCTCCACTGCGTCTGGTTGAAACACCCATGGACAAACAAAAAGCCCTCGACGCCGCCCTCGGCCAGATCGA
ACGTGCCTTCGGCAAGGGTTCGATCATGAAACTCGGCACGCGCGAGCTGCCGACCGAGGCTGACGTTATTTCATCCGGCT
CGCTGGGCCTTGATATCGCGCTCGGCATTGGCGGTTTCCCCCGTGGCCGCATTATCGAGATCTACGGTCCGGAAAGCTCG
GGCAAGACCACCTTGGCCCTGCACGCCATCGCGCAGGCCCAGAAGACCGGGGGCGTCTGCGCCTTCGTGGACGCGGAGCA
TGCGCTCGACCCGTCCTACGCCCGCAAGCTGGGCGTGGACATCGACGAGCTGCTGATCTCCCAGCCCGATGCCGGTGAGC
AGGCGCTGGAAATCGCCGACACGCTGGTCCGCTCCGGTGCCATCGACGTGCTGGTGATCGACTCCGTGGCCGCACTGGTT
CCGCGGGCCGAGCTGGAAGGCGAGATGGGCGACAGCCATGTCGGCCTGCATGCCCGCCTGATGAGCCAGGCGCTCCGCAA
GCTGACCAGCTCGATCAGCAAGTCGAAGTGCATGGTCATCTTCATCAACCAGATCCGCCTGAAGATCGGCGTGATGTTCG
GCAATCCGGAGACGACCACGGGCGGCAACGCCCTGAAGTTCTACGCCTCCGTCCGTCTGGACATCCGCCGTATCGGCGCG
ATCAAGGACCGCGACACGGTGGTTGGCAATCAGACCCGCGTGAAGGTGGTGAAGAACAAGATGGCCCCGCCGTTCCGGGT
GGTGGAGTTCGACATCATGTATGGCGAGGGTGTCTCCAAAGTGGGCGAGCTGCTCGACCTCGGCATCCAGGCCGGCGTGG
TGGAGAAGTCCGGCGCCTGGTTCTCCTATGATGGCACCCGCATCGGCCAGGGCCGCGAGAACGCCAAGACGTTCCTGCGG
AACAACCCGGAAATTTCCGGCGCCATCGAGCAGAAGGTCCGGGCCAATGCCGGCATCGTCGCCGGCGCCATGATGGGCAC
CCCGGAAGCCGACGCCGACGCTTCCAGCCCGGATTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (17-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Glaesserella parasuis strain SC1401	66.763	96.648	0.645
recA	Pseudomonas stutzeri DSM 10701	66.474	96.648	0.642
recA	Neisseria gonorrhoeae MS11	66.377	96.369	0.64
recA	Neisseria gonorrhoeae MS11	66.377	96.369	0.64
recA	Neisseria gonorrhoeae strain FA1090	66.377	96.369	0.64
recA	Ralstonia pseudosolanacearum GMI1000	68.693	91.899	0.631
recA	Acinetobacter baylyi ADP1	65.507	96.369	0.631
recA	Bacillus subtilis subsp. subtilis str. 168	67.178	91.061	0.612
recA	Vibrio cholerae strain A1552	68.224	89.665	0.612
recA	Vibrio cholerae O1 biovar El Tor strain E7946	68.224	89.665	0.612
recA	Acinetobacter baumannii D1279779	67.913	89.665	0.609
recA	Streptococcus mitis NCTC 12261	60.446	100	0.606
recA	Streptococcus mitis SK321	61.429	97.765	0.601
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.951	91.061	0.601
recA	Streptococcus pneumoniae D39	58.904	100	0.601
recA	Streptococcus pneumoniae TIGR4	58.904	100	0.601
recA	Streptococcus pneumoniae R6	58.904	100	0.601
recA	Streptococcus pneumoniae Rx1	58.904	100	0.601
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.303	91.341	0.578
recA	Streptococcus pyogenes NZ131	62.918	91.899	0.578
recA	Streptococcus mutans UA159	62.236	92.458	0.575
recA	Latilactobacillus sakei subsp. sakei 23K	63.19	91.061	0.575
recA	Helicobacter pylori strain NCTC11637	62.27	91.061	0.567
recA	Helicobacter pylori 26695	61.963	91.061	0.564
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.292	94.693	0.561
recA	Lactococcus lactis subsp. cremoris KW2	60.121	92.458	0.556