Detailed information NTG0029948

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SHAL_RS06285
• Genome accession: NC_010334
• Coordinates: 1497704..1498771 (+)
• Length: 355 a.a.
• NCBI ID: WP_012276343.1
• Uniprot ID: -
• Organism: Shewanella halifaxensis HAW-EB4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1492704..1503771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHAL_RS06270 (Shal_1229)	-	1492746..1493642 (+)	897	WP_398364934.1	peptidoglycan DD-metalloendopeptidase family protein	-
SHAL_RS06275 (Shal_1230)	rpoS	1493719..1494684 (+)	966	WP_012276341.1	RNA polymerase sigma factor RpoS	-
SHAL_RS06280 (Shal_1231)	mutS	1494804..1497383 (-)	2580	WP_012276342.1	DNA mismatch repair protein MutS	-
SHAL_RS06285 (Shal_1232)	recA	1497704..1498771 (+)	1068	WP_012276343.1	recombinase RecA	Machinery gene
SHAL_RS06290 (Shal_1233)	alaS	1499301..1501925 (+)	2625	WP_012276344.1	alanine--tRNA ligase	-
SHAL_RS06295 (Shal_1234)	csrA	1502439..1502636 (+)	198	WP_006082602.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 38003.46 Da
• Isoelectric Point: 4.9515

>NTDB_id=29948 SHAL_RS06285 WP_012276343.1 1497704..1498771(+) (recA) [Shewanella halifaxensis HAW-EB4]
MKTDPNKEKALNAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIG
NETRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKSGAWYAYKGNKIGQGRANAGKYLIENPEVSDEI
ETTLRAMLLGNGEKIAPDAADTAGDNVDLETGEVF

Nucleotide

• Length: 1068 bp

>NTDB_id=29948 SHAL_RS06285 WP_012276343.1 1497704..1498771(+) (recA) [Shewanella halifaxensis HAW-EB4]
ATGAAGACAGATCCAAATAAAGAGAAAGCACTGAACGCAGTTTTAAGCCAGATTGAGAAGCAGTTTGGTAAAGGCTCAAT
CATGAAGCTAGGCGAAGACCGTTCAATGGACGTAGAAACGATTTCTACTGGCTCATTATCTTTGGATGTTGCCTTAGGCG
CTGGCGGATTGCCTATGGGTCGTATCGTTGAAATCTACGGTCCAGAATCATCAGGTAAAACTACACTGACACTAGAAGTT
ATTGCAGCGGCTCAGAAGCAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCATGCACTAGACCCGATTTATGCGAAAAA
GCTAGGTGTGGATATCGACAACCTACTTTGTTCTCAGCCTGATACGGGTGAACAAGCTCTTGAAATTTGTGATGCATTAA
CACGCAGCGGCGCAGTTGACGTTATCGTTGTCGACTCAGTAGCAGCCTTGACACCAAAGGCTGAAATTGAAGGCGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAAGCAATGCGTAAGCTTGCGGGTAACCTTAAGCAGTCAAA
TACTCTGCTTATCTTTATTAACCAAATTCGTATGAAGATTGGTGTTATGTTCGGTAATCCTGAAACGACTACTGGCGGTA
ACGCACTTAAGTTCTACGCTTCAGTTCGCTTAGATATCCGCCGTACTGGTGCGATTAAAGATAGAGAAGAAGTGATAGGT
AACGAAACCCGCGTTAAAGTGGTTAAGAACAAGATTGCTGCACCATTCAAGCAAGCCGAGTTCCAAATTCTTTACGGACA
AGGTATTAACAGTACCGGCGAGCTAGTTGACCTTGGTGTACAGCATAAACTAATTGAAAAATCAGGTGCTTGGTATGCTT
ATAAAGGTAACAAGATTGGTCAGGGCCGTGCAAACGCGGGTAAATACCTAATCGAAAACCCTGAAGTGTCTGACGAAATT
GAAACGACACTACGCGCTATGCTGTTAGGCAATGGTGAGAAAATTGCTCCAGATGCTGCAGATACAGCCGGTGACAACGT
TGACTTAGAGACTGGCGAAGTTTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	79.202	98.873	0.783
recA	Vibrio cholerae O1 biovar El Tor strain E7946	79.202	98.873	0.783
recA	Pseudomonas stutzeri DSM 10701	72.515	96.338	0.699
recA	Acinetobacter baumannii D1279779	68.391	98.028	0.67
recA	Acinetobacter baylyi ADP1	72.699	91.831	0.668
recA	Glaesserella parasuis strain SC1401	68.314	96.901	0.662
recA	Neisseria gonorrhoeae MS11	69.659	90.986	0.634
recA	Neisseria gonorrhoeae MS11	69.659	90.986	0.634
recA	Neisseria gonorrhoeae strain FA1090	69.659	90.986	0.634
recA	Ralstonia pseudosolanacearum GMI1000	70.418	87.606	0.617
recA	Streptococcus mitis NCTC 12261	60.227	99.155	0.597
recA	Streptococcus mitis SK321	60.882	95.775	0.583
recA	Streptococcus pneumoniae Rx1	61.493	94.366	0.58
recA	Streptococcus pneumoniae R6	61.493	94.366	0.58
recA	Streptococcus pneumoniae TIGR4	61.493	94.366	0.58
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.493	94.366	0.58
recA	Streptococcus pneumoniae D39	61.493	94.366	0.58
recA	Helicobacter pylori strain NCTC11637	60.059	95.211	0.572
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.539	90.986	0.569
recA	Helicobacter pylori 26695	59.763	95.211	0.569
recA	Lactococcus lactis subsp. cremoris KW2	61.094	92.676	0.566
recA	Latilactobacillus sakei subsp. sakei 23K	62.5	90.141	0.563
recA	Bacillus subtilis subsp. subtilis str. 168	61.875	90.141	0.558
recA	Streptococcus pyogenes NZ131	61.3	90.986	0.558
recA	Streptococcus mutans UA159	61.3	90.986	0.558
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.327	92.113	0.546