Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CTM55_RS07405 Genome accession   NZ_CP030094
Coordinates   1712770..1713792 (-) Length   340 a.a.
NCBI ID   WP_028905427.1    Uniprot ID   -
Organism   Prevotella intermedia strain KCOM 2734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1707770..1718792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTM55_RS07385 (CTM55_07385) - 1707806..1708819 (+) 1014 WP_014709605.1 class II fructose-bisphosphate aldolase -
  CTM55_RS07390 (CTM55_07390) - 1708926..1709924 (+) 999 WP_112200095.1 sialate O-acetylesterase -
  CTM55_RS07395 (CTM55_07395) - 1710080..1711828 (+) 1749 WP_112200096.1 GH25 family lysozyme -
  CTM55_RS07400 (CTM55_07400) - 1712142..1712684 (-) 543 WP_112200097.1 hypothetical protein -
  CTM55_RS07405 (CTM55_07405) recA 1712770..1713792 (-) 1023 WP_028905427.1 recombinase RecA Machinery gene
  CTM55_RS07410 (CTM55_07410) - 1714003..1714323 (-) 321 WP_088438748.1 transcriptional regulator -
  CTM55_RS07415 (CTM55_07415) - 1714361..1715599 (-) 1239 WP_112200098.1 saccharopine dehydrogenase family protein -
  CTM55_RS07420 (CTM55_07420) - 1715613..1716233 (-) 621 WP_099976190.1 DUF6621 family protein -
  CTM55_RS07425 (CTM55_07425) - 1716721..1717746 (-) 1026 WP_112200099.1 porin -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36776.06 Da        Isoelectric Point: 5.3165

>NTDB_id=299082 CTM55_RS07405 WP_028905427.1 1712770..1713792(-) (recA) [Prevotella intermedia strain KCOM 2734]
MTKEEAQNPAEGKLKALQAAMSKIEKDFGKGSIMRMGDEQIENVEVIPSGSIGLDVALGVGGYPRGRIIEIYGPESSGKT
TLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDVDNLWISQPDNGEQALEIADQLIRSSAIDILVVDSVAALTPKK
EIEGDMGDSNVGLQARLMSQALRKLTSTISKTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKD
GDNVIGNQVRVKVVKNKVAPPFRKVEFDILFGEGISKVGEILDLGVEYNIIQKSGSWFSYGGTKLAQGRDATKTMLKDNP
ELVEEITALIQQAITAKQNA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=299082 CTM55_RS07405 WP_028905427.1 1712770..1713792(-) (recA) [Prevotella intermedia strain KCOM 2734]
ATGACTAAAGAAGAAGCACAAAACCCTGCTGAAGGCAAACTGAAGGCCTTACAAGCAGCGATGTCGAAGATAGAAAAAGA
CTTTGGTAAAGGTTCTATCATGCGTATGGGTGATGAACAGATAGAAAACGTGGAAGTAATACCAAGCGGCAGCATCGGTC
TTGATGTTGCTTTAGGCGTAGGTGGCTACCCACGTGGACGCATTATAGAGATTTATGGCCCCGAAAGTTCAGGTAAAACA
ACCCTCGCTATCCACGCCATTGCCGAAGCACAGAAGGCTGGCGGCATAGCTGCATTCATCGACGCAGAGCACGCTTTCGA
CCGTTTCTATGCGCAAAAGTTAGGCGTAGACGTAGATAACTTGTGGATTTCGCAACCCGACAACGGTGAACAAGCATTGG
AAATAGCCGACCAACTTATCCGTTCTTCAGCCATCGACATTCTCGTTGTAGACTCTGTGGCTGCGCTTACACCTAAGAAG
GAAATAGAAGGCGATATGGGAGACTCTAACGTCGGTTTGCAGGCGCGCCTTATGAGTCAGGCTTTGCGCAAGCTGACATC
TACCATCAGCAAGACAAACACTTGCTGTATTTTCATCAATCAGTTGCGCGAAAAGATTGGCGTGATGTTCGGAAACCCCG
AAACAACAACGGGTGGCAACGCTTTGAAGTTCTACAGCTCGGTGCGTTTAGATATTCGTCGCGTTACTTCCATCAAGGAC
GGCGACAATGTTATCGGCAACCAAGTTCGTGTAAAGGTTGTGAAAAACAAGGTTGCGCCTCCTTTCCGTAAGGTAGAATT
CGACATTCTCTTCGGAGAAGGCATCTCTAAAGTGGGCGAAATACTCGACTTGGGTGTGGAATACAACATCATTCAGAAGA
GCGGAAGCTGGTTCAGCTATGGCGGAACAAAGCTCGCACAAGGGCGTGATGCTACCAAGACCATGCTGAAAGACAATCCT
GAACTTGTAGAAGAGATTACAGCACTGATACAACAAGCCATTACTGCAAAGCAAAACGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.096

100

0.697
  recA Neisseria gonorrhoeae MS11

68.731

95

0.653
  recA Neisseria gonorrhoeae MS11

68.731

95

0.653
  recA Neisseria gonorrhoeae strain FA1090

68.731

95

0.653
  recA Bacillus subtilis subsp. subtilis str. 168

66.144

93.824

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

95.588

0.612
  recA Ralstonia pseudosolanacearum GMI1000

66.881

91.471

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

97.941

0.609
  recA Glaesserella parasuis strain SC1401

62.727

97.059

0.609
  recA Acinetobacter baylyi ADP1

62.997

96.176

0.606
  recA Helicobacter pylori 26695

62.614

96.765

0.606
  recA Helicobacter pylori strain NCTC11637

62.31

96.765

0.603
  recA Pseudomonas stutzeri DSM 10701

62.385

96.176

0.6
  recA Acinetobacter baumannii D1279779

62.346

95.294

0.594
  recA Streptococcus mitis NCTC 12261

62.975

92.941

0.585
  recA Streptococcus mitis SK321

62.975

92.941

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

99.118

0.585
  recA Streptococcus pyogenes NZ131

62.264

93.529

0.582
  recA Streptococcus pneumoniae Rx1

62.658

92.941

0.582
  recA Streptococcus pneumoniae D39

62.658

92.941

0.582
  recA Streptococcus pneumoniae R6

62.658

92.941

0.582
  recA Streptococcus pneumoniae TIGR4

62.658

92.941

0.582
  recA Streptococcus mutans UA159

60.182

96.765

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.681

95

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.574

96.765

0.576
  recA Vibrio cholerae strain A1552

59.574

96.765

0.576

Multiple sequence alignment