Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DPF84_RS14895 Genome accession   NZ_CP030076
Coordinates   2995349..2996407 (+) Length   352 a.a.
NCBI ID   WP_015571667.1    Uniprot ID   A0A837F5V8
Organism   Enterobacter hormaechei strain 20710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2990349..3001407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPF84_RS14870 (DPF84_14865) mltB 2990861..2991961 (+) 1101 WP_057979986.1 lytic murein transglycosylase B -
  DPF84_RS14875 (DPF84_14870) - 2992228..2992881 (+) 654 WP_022651726.1 ATP-binding cassette domain-containing protein -
  DPF84_RS14880 (DPF84_14875) - 2992878..2993738 (+) 861 WP_015571669.1 metal ABC transporter permease -
  DPF84_RS14885 (DPF84_14880) - 2993753..2994631 (+) 879 WP_058662885.1 metal ABC transporter substrate-binding protein -
  DPF84_RS14890 (DPF84_14885) pncC 2994762..2995259 (+) 498 WP_003862172.1 nicotinamide-nucleotide amidase -
  DPF84_RS14895 (DPF84_14890) recA 2995349..2996407 (+) 1059 WP_015571667.1 recombinase RecA Machinery gene
  DPF84_RS14900 (DPF84_14895) recX 2996476..2996976 (+) 501 WP_017382782.1 recombination regulator RecX -
  DPF84_RS14905 (DPF84_14900) alaS 2997108..2999735 (+) 2628 WP_022651724.1 alanine--tRNA ligase -
  DPF84_RS14910 (DPF84_14905) csrA 2999977..3000162 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37804.24 Da        Isoelectric Point: 4.8095

>NTDB_id=298961 DPF84_RS14895 WP_015571667.1 2995349..2996407(+) (recA) [Enterobacter hormaechei strain 20710]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=298961 DPF84_RS14895 WP_015571667.1 2995349..2996407(+) (recA) [Enterobacter hormaechei strain 20710]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGATGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTTAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACTACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGATAACGTAGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACTTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCTAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837F5V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.966

98.864

0.682
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

94.318

0.557

Multiple sequence alignment